Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

7981722 .. 7984334

Gene Structure 2613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACAATGGCACCGAAACGATGTTTTAAAACGAACGAATCTACCAAATCGGTCAGAGTGGCTTGCAGATCTTTAAGGAGTCCTTCCGTGAGACGGTTAAGCGAACTTCCGGTAGAGAAGCAGACCAAATACATGATGGACCAGAAGGATCTCATGAACAAGATGATCCAAGACGCAGAGAAGAAGTTGGAGAAGGAGAAGATGCATACTCGTGCGATGAAACTTGGGTTAATGGCTGGGTCTAATGATCTAATCACCGATACTGATTGTTCGGAGGAACTGGCCAGAGCAGCTGATGTGGTTGATAAGAAGCTCAAAGCCATCAGAGAGAGAATCAAGGCTGTTGAAGCAGGAGCACCAATCATCAAGAGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043900 GO:0043902 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045785 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060256 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1900735 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

125

Amino Acids

14.23

Weight (kDa)

9.64

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 50	7.5e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AclWI	GGATC	2 cut(s)	156, 160
AcoI	YGGCCR	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	347
AluBI	AGCT	2 cut(s)	293, 313
AluI	AGCT	2 cut(s)	293, 313
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	2 cut(s)	85, 366
AlwI	GGATC	2 cut(s)	156, 160
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	130, 329
BcoDI	GTCTC	2 cut(s)	85, 366
BfaI	CTAG	1 cut(s)	376
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	85, 366
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	4 cut(s)	68, 148, 165, 247
BspANI	GGCC	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	156, 160
BspT107I	GGYRCC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	285
BssMI	GATC	4 cut(s)	68, 148, 165, 247
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	64
BstKTI	GATC	4 cut(s)	71, 151, 168, 250
BstMAI	GTCTC	2 cut(s)	85, 366
BstMBI	GATC	4 cut(s)	68, 148, 165, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 347
BstV1I	GCAGC	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	68, 148
BstYI	RGATCY	2 cut(s)	68, 148
BsuRI	GGCC	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	133, 154
CviJI	RGCY	7 cut(s)	62, 236, 284, 293, 313, 320, 341
CviKI_1	RGCY	7 cut(s)	62, 236, 284, 293, 313, 320, 341
DpnI	GATC	4 cut(s)	70, 150, 167, 249
DpnII	GATC	4 cut(s)	68, 148, 165, 247
DraI	TTTAAA	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	136, 157
FaiI	YATR	3 cut(s)	134, 155, 207
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	2 cut(s)	132, 153
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	376
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	136, 157
HinfI	GANTC	3 cut(s)	38, 79, 333
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	56, 274, 326
Hpy188III	TCNNGA	2 cut(s)	154, 367
HpyAV	CCTTC	3 cut(s)	93, 139, 187
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	66, 205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 347
Hsp92II	CATG	2 cut(s)	136, 157
Kzo9I	GATC	4 cut(s)	68, 148, 165, 247
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	6 cut(s)	123, 155, 222, 266, 298, 336
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	376
MalI	GATC	4 cut(s)	70, 150, 167, 249
MboI	GATC	4 cut(s)	68, 148, 165, 247
MboII	GAAGA	2 cut(s)	193, 211
MflI	RGATCY	2 cut(s)	68, 148
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	1 cut(s)	268
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	4 cut(s)	27, 74, 98, 230
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	290, 347
NdeII	GATC	4 cut(s)	68, 148, 165, 247
NlaIII	CATG	2 cut(s)	136, 157
NlaIV	GGNNCC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	207
PagI	TCATGA	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	38, 333
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	68, 148
PvuII	CAGCTG	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	27, 74, 98, 230
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	4 cut(s)	68, 148, 165, 247
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	2 cut(s)	295, 315
SfaNI	GCATC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	210
SspMI	CTAG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	38, 333
Tru1I	TTAA	4 cut(s)	27, 74, 98, 230
Tru9I	TTAA	4 cut(s)	27, 74, 98, 230
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	170, 233
TspGWI	ACGGA	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	376
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.