Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

47902780 .. 47903544

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1387300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACTAGAAAGAAAGTAAAACTAACCTACATCAGCAACGACTCGGCGCGAAAGGCAACGTACAAGAAGAGAAAGAAGGGCTTGATGAAGAAGGTGAGTGAACTCAGCACCCTTTGTGATGTTCAAGCATGCGCGATTATTTACAGCCCGTATGACTCTCAACCGGAGGTCTGGCCATCGCCGTTGGGAGTCCAGCGGGTTCTTGCCCAGTTCAAGACCATGCCGGAGATGGAGCAGAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGCGGCAGCGGATCGCCAAGGCCAACGAGCAATTGAAGAAGCAAAGGAAGGAGAACCGCGAGAAGGAGATGACGAGAGTGATGTTCCAGAGTCTGACTGGGAAATCCCTCCAGGGTTTGAGCATGGTTGATTTGCATGATTTGGGGTGGCTGGTTGACCAAAATTTGAAGGAGATCCACAACCGGATGAAGAGTCTGAATGATCAGGAATCTAAGAGCCAAGTGCAACTACAACCAACGGTGCTGCCTGCAGCTGCTGCAACAGCGGCGGAGGGTGAAGTGGAGAGGCAGCAGGGTTTTGCGCTGAACAATAATGTGGACACCGCAGTGCAGAGGCAGCATCAGCCATGGTTCATGGACATGATGAACGTCCCACAAGATTATCAGCAGCAGCATATGGCAGGGCTTGGTGGTGGAGATGAGGTGCATATGCTGCCATTTCCAGCGGATCACAGCCAAGTTAATGCAATTTGGTCTAATAATTCCTTTTACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

255

Amino Acids

29.07

Weight (kDa)

9.3

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	1.1e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	49, 134, 327
AciI	CCGC	8 cut(s)	196, 271, 277, 325, 533, 536, 591, 713
AclWI	GGATC	3 cut(s)	287, 436, 723
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	125, 214, 304, 436
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AleI	CACNNNNGTG	1 cut(s)	593
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
AlwI	GGATC	3 cut(s)	287, 436, 723
AlwNI	CAGNNNCTG	2 cut(s)	361, 524
AoxI	GGCC	2 cut(s)	173, 288
ApoI	RAATTY	1 cut(s)	430
AspLEI	GCGC	3 cut(s)	49, 134, 571
AsuHPI	GGTGA	3 cut(s)	106, 262, 554
BalI	TGGCCA	1 cut(s)	175
BccI	CCATC	3 cut(s)	184, 223, 241
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	469
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	380
BmrI	ACTGGG	2 cut(s)	202, 375
BmsI	GCATC	1 cut(s)	616
BmuI	ACTGGG	2 cut(s)	202, 375
BpmI	CTGGAG	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	285, 379, 614
BsaWI	WCCGGW	2 cut(s)	163, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	2 cut(s)	208, 370
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	285, 379, 614
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	208, 370
BsgI	GTGCAG	1 cut(s)	617
Bsh1236I	CGCG	3 cut(s)	49, 134, 327
BshFI	GGCC	2 cut(s)	175, 290
BsiSI	CCGG	3 cut(s)	164, 224, 451
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	175, 290
Bsp143I	GATC	4 cut(s)	279, 441, 469, 715
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	8 cut(s)	196, 271, 277, 325, 533, 536, 591, 713
BspANI	GGCC	2 cut(s)	175, 290
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	3 cut(s)	49, 134, 327
BspMAI	CTGCAG	1 cut(s)	520
BspPI	GGATC	3 cut(s)	287, 436, 723
BsrI	ACTGG	2 cut(s)	208, 370
BssECI	CCNNGG	3 cut(s)	285, 379, 614
BssMI	GATC	4 cut(s)	279, 441, 469, 715
BssT1I	CCWWGG	2 cut(s)	285, 614
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	62, 452
BstAPI	GCANNNNNTGC	2 cut(s)	524, 700
BstC8I	GCNNGC	2 cut(s)	130, 516
BstDEI	CTNAG	2 cut(s)	104, 480
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	1 cut(s)	459
BstFNI	CGCG	3 cut(s)	49, 134, 327
BstHHI	GCGC	3 cut(s)	49, 134, 571
BstKTI	GATC	4 cut(s)	282, 444, 472, 718
BstMBI	GATC	4 cut(s)	279, 441, 469, 715
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 524, 530, 533, 604, 610, 700
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	3 cut(s)	49, 134, 327
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	175, 290
BtgI	CCRYGG	1 cut(s)	614
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	459
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	130, 516
CaiI	CAGNNNCTG	2 cut(s)	361, 524
CfoI	GCGC	3 cut(s)	49, 134, 571
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	7 cut(s)	129, 220, 391, 404, 615, 622, 628
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	104, 480
DpnI	GATC	4 cut(s)	281, 443, 471, 717
DpnII	GATC	4 cut(s)	279, 441, 469, 715
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	62, 452
EarI	CTCTTC	2 cut(s)	62, 452
EciI	GGCGGA	1 cut(s)	551
Eco130I	CCWWGG	2 cut(s)	285, 614
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	285, 614
ErhI	CCWWGG	2 cut(s)	285, 614
FaeI	CATG	7 cut(s)	132, 223, 394, 407, 618, 625, 631
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	7 cut(s)	128, 219, 390, 403, 614, 621, 627
FauI	CCCGC	1 cut(s)	189
FauNDI	CATATG	2 cut(s)	663, 696
FbaI	TGATCA	1 cut(s)	469
FokI	GGATG	1 cut(s)	466
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	48, 133, 570
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	175, 290
HapII	CCGG	3 cut(s)	164, 224, 451
HhaI	GCGC	3 cut(s)	49, 134, 571
Hin1II	CATG	7 cut(s)	132, 223, 394, 407, 618, 625, 631
Hin6I	GCGC	3 cut(s)	47, 132, 569
HinP1I	GCGC	3 cut(s)	47, 132, 569
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	6 cut(s)	41, 155, 189, 358, 460, 476
HpaII	CCGG	3 cut(s)	164, 224, 451
HphI	GGTGA	3 cut(s)	106, 262, 554
Hpy166II	GTNNAC	4 cut(s)	101, 253, 424, 586
Hpy188I	TCNGA	2 cut(s)	363, 465
Hpy188III	TCNNGA	3 cut(s)	214, 355, 473
Hpy8I	GTNNAC	4 cut(s)	101, 253, 424, 586
HpyAV	CCTTC	5 cut(s)	70, 85, 310, 325, 430
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	2 cut(s)	59, 636
HpyCH4V	TGCA	7 cut(s)	403, 493, 518, 527, 598, 694, 734
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 524, 530, 533, 604, 610, 700
HpyF3I	CTNAG	2 cut(s)	104, 480
HpySE526I	ACGT	2 cut(s)	59, 636
Hsp92II	CATG	7 cut(s)	132, 223, 394, 407, 618, 625, 631
HspAI	GCGC	3 cut(s)	47, 132, 569
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	279, 441, 469, 715
LmnI	GCTCC	1 cut(s)	232
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	59, 636
MalI	GATC	4 cut(s)	281, 443, 471, 717
MboI	GATC	4 cut(s)	279, 441, 469, 715
MboII	GAAGA	5 cut(s)	79, 100, 256, 316, 469
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	1 cut(s)	441
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	4 cut(s)	299, 430, 735, 748
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	5 cut(s)	35, 149, 198, 367, 469
MnlI	CCTC	6 cut(s)	160, 386, 532, 546, 594, 682
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	2 cut(s)	729, 763
MslI	CAYNNNNRTG	2 cut(s)	593, 626
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	5 cut(s)	196, 277, 521, 533, 713
MspI	CCGG	3 cut(s)	164, 224, 451
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	3 cut(s)	49, 134, 327
MwoI	GCNNNNNNNGC	7 cut(s)	53, 524, 530, 533, 604, 610, 700
NcoI	CCATGG	1 cut(s)	614
NdeI	CATATG	2 cut(s)	663, 696
NdeII	GATC	4 cut(s)	279, 441, 469, 715
NlaIII	CATG	7 cut(s)	132, 223, 394, 407, 618, 625, 631
NmeAIII	GCCGAG	1 cut(s)	23
NspI	RCATGY	1 cut(s)	132
OliI	CACNNNNGTG	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	476
PleI	GAGTC	5 cut(s)	35, 149, 197, 366, 468
PpsI	GAGTC	5 cut(s)	35, 149, 197, 366, 468
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	2 cut(s)	361, 524
PsuI	RGATCY	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	2 cut(s)	593, 626
SaqAI	TTAA	2 cut(s)	729, 763
Sau3AI	GATC	4 cut(s)	279, 441, 469, 715
SchI	GAGTC	5 cut(s)	35, 149, 198, 367, 469
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	7 cut(s)	29, 62, 96, 171, 523, 639, 693
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	2 cut(s)	593, 626
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	4 cut(s)	299, 430, 735, 748
SsiI	CCGC	8 cut(s)	196, 271, 277, 325, 533, 536, 591, 713
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	285, 614
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	2 cut(s)	62, 639
TasI	AATT	4 cut(s)	299, 430, 735, 748
TauI	GCSGC	2 cut(s)	274, 536
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	729, 763
Tru9I	TTAA	2 cut(s)	729, 763
TscAI	CASTG	1 cut(s)	600
TspDTI	ATGAA	4 cut(s)	101, 470, 610, 647
TspRI	CASTG	1 cut(s)	600
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	132
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 362
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.