Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

9350812 .. 9351620

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGACGAGACAGAAAGTGAAAATGACTTTCATAGAAAATGAAACAGCAAGAAAATCAACATTCAAGAAAAGAAAGAAAGGTCTTTTGAAGAAAGCTCAAGAGTTGGGAATTCTTTGTGGCGTCCCGATCTTTGCTGTCGTCAACAGTCCGTACGAGCTGAACCCGGAGGTGTGGCCATCGAGAGAGGCTGCGAACCAGGTGGTGTCCCAATGGAAGACGATGTCGGTGATGGACAAGACCAAGAAGATGGTGAACCAAGAGACCTTTCTCCAACAGAGGATCACCAAAGCAACCGAGTCTTGGAAGAAGTTGCGGAAAGAGAACAAAGAGTTGGAGATGAAGAACATTATGTTTGATTGTCTTAGTGGCAAAACTTTGGTTTCTAGTATCGAAAAAACTGAGCTTCGAGATTTTGGTTATGTCATTGAACAACAACTCAAAGATGTTAATCGTAGGATCGAGATTCTGAAAAGGAACAATGAACCATCTTCCGCCCTCGTTCCTGTTGCTGCCCCTACAACATCTAGTGTCATGCCTGTGGTTGAGATGGGTTCTTCTTCGGTTGGATTTTACGACAAGGTTCGAGATCAAATTCAAATTACTTTGAATATGAAACAGACCACAAATGATTTGGATCTGAACAAGAAACAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

218

Amino Acids

25.12

Weight (kDa)

9.72

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	1.6e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	313, 492
AclWI	GGATC	3 cut(s)	287, 464, 642
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	108, 591
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	5 cut(s)	64, 88, 428, 596, 607
AjnI	CCWGG	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	4 cut(s)	249, 281, 314, 346
AluBI	AGCT	3 cut(s)	95, 157, 403
AluI	AGCT	3 cut(s)	95, 157, 403
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	287, 464, 642
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	188, 509
ApoI	RAATTY	2 cut(s)	108, 591
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	238, 262, 274
BalI	TGGCCA	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	175, 496
BccI	CCATC	5 cut(s)	184, 223, 241, 493, 541
BciT130I	CCWGG	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	384, 525
BisI	GCNGC	2 cut(s)	189, 510
BlsI	GCNGC	2 cut(s)	190, 511
Bme1390I	CCNGG	2 cut(s)	164, 197
BmrFI	CCNGG	2 cut(s)	164, 197
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	164
BsaBI	GATNNNNATC	2 cut(s)	447, 633
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse8I	GATNNNNATC	2 cut(s)	447, 633
BseBI	CCWGG	1 cut(s)	197
BseJI	GATNNNNATC	2 cut(s)	447, 633
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	175, 496
BshFI	GGCC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	164
BsiWI	CGTACG	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	107, 190
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	107, 190
BsnI	GGCC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	254
Bsp143I	GATC	5 cut(s)	126, 279, 456, 586, 634
BspACI	CCGC	2 cut(s)	313, 492
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	287, 464, 642
BspTNI	GGTCTC	1 cut(s)	254
BssMI	GATC	5 cut(s)	126, 279, 456, 586, 634
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	146, 651
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	362, 399
BstKTI	GATC	5 cut(s)	129, 282, 459, 589, 637
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	5 cut(s)	126, 279, 456, 586, 634
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	162, 195
BstV1I	GCAGC	2 cut(s)	175, 496
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	656
CseI	GACGC	1 cut(s)	109
CsiI	ACCWGGT	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	532
CviJI	RGCY	5 cut(s)	95, 157, 175, 188, 403
CviKI_1	RGCY	5 cut(s)	95, 157, 175, 188, 403
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	362, 399
DpnI	GATC	5 cut(s)	128, 281, 458, 588, 636
DpnII	GATC	5 cut(s)	126, 279, 456, 586, 634
EaeI	YGGCCR	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	481
Eco31I	GGTCTC	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	535
FaiI	YATR	5 cut(s)	32, 350, 420, 533, 611
FaqI	GGGAC	2 cut(s)	107, 190
FatI	CATG	1 cut(s)	531
Fnu4HI	GCNGC	2 cut(s)	189, 510
Fsp4HI	GCNGC	2 cut(s)	189, 510
FspBI	CTAG	2 cut(s)	384, 525
GluI	GCNGC	2 cut(s)	189, 510
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	535
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	296, 463
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	3 cut(s)	238, 262, 274
Hpy166II	GTNNAC	2 cut(s)	142, 253
Hpy188I	TCNGA	2 cut(s)	468, 639
Hpy188III	TCNNGA	7 cut(s)	64, 98, 124, 180, 407, 460, 584
Hpy8I	GTNNAC	2 cut(s)	142, 253
HpyCH4III	ACNGT	2 cut(s)	146, 651
HpyF3I	CTNAG	2 cut(s)	362, 399
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	126, 279, 456, 586, 634
LpnPI	CCDG	5 cut(s)	177, 182, 209, 516, 549
Lsp1109I	GCAGC	2 cut(s)	175, 496
MabI	ACCWGGT	1 cut(s)	195
MaeI	CTAG	2 cut(s)	384, 525
MalI	GATC	5 cut(s)	128, 281, 458, 588, 636
MboI	GATC	5 cut(s)	126, 279, 456, 586, 634
MboII	GAAGA	8 cut(s)	100, 226, 256, 316, 352, 480, 546, 549
MflI	RGATCY	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	3 cut(s)	108, 591, 597
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	3 cut(s)	295, 312, 544
MnlI	CCTC	4 cut(s)	160, 178, 270, 506
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	175
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	164, 197
MvaI	CCWGG	1 cut(s)	197
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	5 cut(s)	126, 279, 456, 586, 634
NlaIII	CATG	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	463
Pfl23II	CGTACG	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	190, 511
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspLI	CGTACG	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	634
PsyI	GACNNNGTC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	189, 510
Sau3AI	GATC	5 cut(s)	126, 279, 456, 586, 634
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	164, 197
SetI	ASST	8 cut(s)	82, 97, 159, 171, 201, 266, 405, 582
SexAI	ACCWGGT	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	3 cut(s)	108, 591, 597
SsiI	CCGC	2 cut(s)	313, 492
SspMI	CTAG	2 cut(s)	384, 525
StyD4I	CCNGG	2 cut(s)	162, 195
TaaI	ACNGT	2 cut(s)	146, 651
TaqI	TCGA	5 cut(s)	179, 390, 406, 459, 583
TasI	AATT	3 cut(s)	108, 591, 597
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	656
TseI	GCWGC	2 cut(s)	188, 509
TspDTI	ATGAA	5 cut(s)	19, 54, 353, 495, 626
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	656
Tth111I	GACNNNGTC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	108, 591
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XspI	CTAG	2 cut(s)	384, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.