Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

28057751 .. 28058949

Gene Structure 1199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1199700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAATATAAGAAAGGTGAAACTAGCCTTCATCATAAACAATGTATCGCGAAAAGCGACATTAAGGAAAATGAAGAGGGGCTTCATGAAGAAGATGTATGAGATCAATAAGCTTTGCGATGTTCCAACATGTGCTATAATGTACAGTCCAGATGAGTCTCAACCTGAAGTCTGGCCTGATTCTTCAGGAAGGATAAAAAAAGAGCAGGAGAAGCTCAACAAGCTGAAGAAACAGAACCGGGAGAAACAAATTCAGATGCTCATGAACCAGTGCCTCACTGGGAAGCCCCTGACTGGCTTGGACTTCAATGATTTAGAGGATATGGGGTCAATGATCAACGAGACATTGAAGGACATTGTCGCGAAGATCAAGAGCCGAAAGGAGGAAGAGCTGGTAGAGATGGATCAACCCTCAGTTGCACAACCACCGATGCATGCATCAGTAACTGATGAGAACTTTCATGACACCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

158

Amino Acids

18.16

Weight (kDa)

8.91

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 52	1.5e-09	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	49, 362
AclWI	GGATC	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	249
AcuI	CTGAAG	3 cut(s)	168, 186, 245
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	293, 382
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	307, 349
AluBI	AGCT	4 cut(s)	112, 214, 223, 391
AluI	AGCT	4 cut(s)	112, 214, 223, 391
Alw26I	GTCTC	2 cut(s)	162, 335
AlwI	GGATC	1 cut(s)	411
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	249
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	28
BccI	CCATC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	162, 335
BfaI	CTAG	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	246, 420, 446
BmuI	ACTGGG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 382
Bse1I	ACTGG	3 cut(s)	268, 283, 298
BseLI	CCNNNNNNNGG	2 cut(s)	293, 382
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	3 cut(s)	268, 283, 298
Bsh1236I	CGCG	2 cut(s)	49, 362
BshFI	GGCC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	293, 382
BsmAI	GTCTC	2 cut(s)	162, 335
BsnI	GGCC	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	102, 333, 366, 403
Bsp68I	TCGCGA	2 cut(s)	49, 362
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	425
BspFNI	CGCG	2 cut(s)	49, 362
BspHI	TCATGA	3 cut(s)	84, 261, 460
BspPI	GGATC	1 cut(s)	411
BspQI	GCTCTTC	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	3 cut(s)	268, 283, 298
BssMI	GATC	4 cut(s)	102, 333, 366, 403
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	2 cut(s)	68, 381
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	412, 471
BstFNI	CGCG	2 cut(s)	49, 362
BstKTI	GATC	4 cut(s)	105, 336, 369, 406
BstMAI	GTCTC	2 cut(s)	162, 335
BstMBI	GATC	4 cut(s)	102, 333, 366, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 220
BstNSI	RCATGY	2 cut(s)	132, 437
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	2 cut(s)	49, 362
BsuRI	GGCC	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	275, 276
BtuMI	TCGCGA	2 cut(s)	49, 362
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	446
CciI	TCATGA	3 cut(s)	84, 261, 460
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	5 cut(s)	85, 129, 262, 434, 461
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	412, 471
DpnI	GATC	4 cut(s)	104, 335, 368, 405
DpnII	GATC	4 cut(s)	102, 333, 366, 403
Eam1104I	CTCTTC	2 cut(s)	68, 381
EarI	CTCTTC	2 cut(s)	68, 381
Eco57I	CTGAAG	3 cut(s)	168, 186, 245
EcoT22I	ATGCAT	2 cut(s)	435, 439
FaeI	CATG	5 cut(s)	88, 132, 265, 437, 464
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	5 cut(s)	84, 128, 261, 433, 460
FbaI	TGATCA	1 cut(s)	333
FspBI	CTAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	5 cut(s)	88, 132, 265, 437, 464
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	155, 179
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	8 cut(s)	48, 85, 149, 186, 262, 361, 370, 461
HpyAV	CCTTC	3 cut(s)	37, 183, 343
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	419, 433, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 220
HpyF3I	CTNAG	2 cut(s)	412, 471
Hsp92II	CATG	5 cut(s)	88, 132, 265, 437, 464
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	4 cut(s)	102, 333, 366, 403
LguI	GCTCTTC	1 cut(s)	381
LweI	GCATC	3 cut(s)	246, 420, 446
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	4 cut(s)	104, 335, 368, 405
MboI	GATC	4 cut(s)	102, 333, 366, 403
MboII	GAAGA	7 cut(s)	85, 100, 103, 174, 238, 376, 398
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	69, 284, 310, 376, 421
Mph1103I	ATGCAT	2 cut(s)	435, 439
MseI	TTAA	1 cut(s)	62
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	239
MvnI	CGCG	2 cut(s)	49, 362
MwoI	GCNNNNNNNGC	2 cut(s)	211, 220
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	4 cut(s)	102, 333, 366, 403
NlaIII	CATG	5 cut(s)	88, 132, 265, 437, 464
NruI	TCGCGA	2 cut(s)	49, 362
NsiI	ATGCAT	2 cut(s)	435, 439
NspI	RCATGY	2 cut(s)	132, 437
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	3 cut(s)	84, 261, 460
PciI	ACATGT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	356
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PscI	ACATGT	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	446
PsyI	GACNNNGTC	1 cut(s)	356
RruI	TCGCGA	2 cut(s)	49, 362
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	62
Sau3AI	GATC	4 cut(s)	102, 333, 366, 403
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	6 cut(s)	18, 114, 166, 216, 225, 393
SfaNI	GCATC	3 cut(s)	246, 420, 446
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	249
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	146
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	2 cut(s)	275, 283
TspDTI	ATGAA	7 cut(s)	17, 19, 73, 86, 101, 278, 449
TspRI	CASTG	2 cut(s)	275, 283
Tth111I	GACNNNGTC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	2 cut(s)	132, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	23
Zsp2I	ATGCAT	2 cut(s)	435, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.