Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

7444257 .. 7445144

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGACTAGAAAGAAGGTGAAACTTGCCTACATCACTAATGATAGTGCTCGAAAAGCAACATATAAGAAAAGGAAGAAGGGTCTTATGAAAAAGGTGAGCGAACTCACCACCCTTTGTGACATTGATGCTTGTGCTATTATCTACAGCCCCTATGACTCCCAGCCTGAAATTTGGCCTTCTCCCTTAGGAGTCCAACGTGTGCTTGCGCAGTTCAAGACCATGCCTGAAATGGAGCAAAGCAAGAAGATGGTGAATCAAGAGAGTTTCTTGAGGCAAAGAATCAACAAGGCTCAGGAACAACTCAAGAAGCAAAAGAAAGACAACCGAGAAAAGGAGATGGCTCGTGTGATGTTCCAAAGCCTAACTGGAAAGTCTCTCCAGGGCTTGACACTGTCAGACCTAACTGATCTTGGCTGGGTCATTGACCAGCACTTGAAGGAAATGGTGGCGATGAAGAGTAATAGAGAGGACAGTGGCAGCAACATGGCAATGAAGAGTGGTGAAGAGGGCAGCAGCATGCAGCATGCAGCCCTTGACAGGCAAGCTTTTGATCACATGCATAACATGGAGGCAATGCAGCTCCAAATGATGCATATGGCAGCTCAGAAGCAGCAAAATCACTGGTTCATGGATATGATGAATGCGCCGCCACAACCACCACTGCCACATCCAGATAATCATGAGCATATGGGGTTTACCGGTGAGGATATGATGCTTCCCTTCGCGGATCATAACCACAGCACTATGTGGCCGAATCCTCCTCCTGCTGGCGGCTTTAATTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

262

Amino Acids

30.1

Weight (kDa)

8.91

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	7.6e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
AccII	CGCG	1 cut(s)	725
AciI	CCGC	3 cut(s)	647, 725, 771
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	749
AcsI	RAATTY	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	747
AfiI	CCNNNNNNNGG	4 cut(s)	331, 537, 767, 770
AflIII	ACRYGT	1 cut(s)	196
AgeI	ACCGGT	1 cut(s)	698
AgsI	TTSAA	2 cut(s)	214, 436
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	3 cut(s)	545, 580, 602
AluI	AGCT	3 cut(s)	545, 580, 602
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	735
AoxI	GGCC	2 cut(s)	173, 749
ApeKI	GCWGC	8 cut(s)	477, 510, 513, 520, 527, 577, 599, 610
ApoI	RAATTY	1 cut(s)	168
AsiGI	ACCGGT	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	208, 646
AsuHPI	GGTGA	6 cut(s)	28, 97, 106, 262, 512, 713
AxyI	CCTNAGG	1 cut(s)	184
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	8 cut(s)	489, 522, 525, 532, 539, 589, 611, 622
BccI	CCATC	2 cut(s)	241, 331
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	3 cut(s)	115, 579, 702
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	287, 289
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	4 cut(s)	331, 537, 767, 770
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	370, 626
Bse21I	CCTNAGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	495, 579
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	4 cut(s)	331, 537, 767, 770
BseMI	GCAATG	2 cut(s)	495, 579
BseMII	CTCAG	2 cut(s)	305, 617
BseNI	ACTGG	2 cut(s)	370, 626
BseRI	GAGGAG	1 cut(s)	750
BseXI	GCAGC	8 cut(s)	489, 522, 525, 532, 539, 589, 611, 622
BseYI	CCCAGC	2 cut(s)	159, 414
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	2 cut(s)	175, 751
BshTI	ACCGGT	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	699
BslI	CCNNNNNNNGG	4 cut(s)	331, 537, 767, 770
BsmAI	GTCTC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	175, 751
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	406, 550, 727
BspACI	CCGC	3 cut(s)	647, 725, 771
BspANI	GGCC	2 cut(s)	175, 751
BspCNI	CTCAG	2 cut(s)	304, 616
BspFNI	CGCG	1 cut(s)	725
BspHI	TCATGA	1 cut(s)	679
BspPI	GGATC	1 cut(s)	735
BsrDI	GCAATG	2 cut(s)	495, 579
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	370, 626
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	3 cut(s)	406, 550, 727
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	393, 473
Bst6I	CTCTTC	3 cut(s)	449, 488, 498
BstC8I	GCNNGC	5 cut(s)	204, 518, 525, 543, 769
BstDEI	CTNAG	3 cut(s)	184, 291, 603
BstF5I	GGATG	1 cut(s)	667
BstFNI	CGCG	1 cut(s)	725
BstHHI	GCGC	2 cut(s)	208, 646
BstKTI	GATC	3 cut(s)	409, 553, 730
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	3 cut(s)	406, 550, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	3 cut(s)	520, 527, 559
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	8 cut(s)	489, 522, 525, 532, 539, 589, 611, 622
Bsu36I	CCTNAGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	175, 751
BtgZI	GCGATG	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	659
BtsIMutI	CAGTG	4 cut(s)	389, 478, 619, 659
Cac8I	GCNNGC	5 cut(s)	204, 518, 525, 543, 769
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	2 cut(s)	208, 646
Cfr10I	RCCGGY	1 cut(s)	698
CspAI	ACCGGT	1 cut(s)	698
CviAII	CATG	8 cut(s)	220, 484, 517, 524, 556, 565, 628, 680
DdeI	CTNAG	3 cut(s)	184, 291, 603
DpnI	GATC	3 cut(s)	408, 552, 729
DpnII	GATC	3 cut(s)	406, 550, 727
DraIII	CACNNNGTG	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	749
Eam1104I	CTCTTC	3 cut(s)	449, 488, 498
EarI	CTCTTC	3 cut(s)	449, 488, 498
Eco81I	CCTNAGG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	378
EcoT22I	ATGCAT	2 cut(s)	561, 594
FaeI	CATG	8 cut(s)	223, 487, 520, 527, 559, 568, 631, 683
FatI	CATG	8 cut(s)	219, 483, 516, 523, 555, 564, 627, 679
FauNDI	CATATG	2 cut(s)	594, 687
FbaI	TGATCA	1 cut(s)	550
FokI	GGATG	1 cut(s)	654
FspBI	CTAG	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	2 cut(s)	207, 645
GsaI	CCCAGC	2 cut(s)	163, 418
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	175, 751
HapII	CCGG	1 cut(s)	699
HhaI	GCGC	2 cut(s)	208, 646
Hin1II	CATG	8 cut(s)	223, 487, 520, 527, 559, 568, 631, 683
Hin6I	GCGC	2 cut(s)	206, 644
HinP1I	GCGC	2 cut(s)	206, 644
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	5 cut(s)	155, 189, 253, 279, 754
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	6 cut(s)	28, 97, 106, 262, 512, 713
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	2 cut(s)	397, 606
Hpy188III	TCNNGA	7 cut(s)	214, 257, 268, 293, 304, 671, 680
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	5 cut(s)	7, 70, 186, 430, 730
HpyCH4III	ACNGT	2 cut(s)	393, 473
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	520, 527, 559, 577, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	184, 291, 603
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	8 cut(s)	223, 487, 520, 527, 559, 568, 631, 683
HspAI	GCGC	2 cut(s)	206, 644
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	406, 550, 727
LmnI	GCTCC	2 cut(s)	232, 585
Lsp1109I	GCAGC	8 cut(s)	489, 522, 525, 532, 539, 589, 611, 622
LweI	GCATC	3 cut(s)	115, 579, 702
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	408, 552, 729
MboI	GATC	3 cut(s)	406, 550, 727
MboII	GAAGA	5 cut(s)	85, 256, 466, 505, 515
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	168, 778
MlyI	GAGTC	2 cut(s)	149, 198
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	264, 460, 499, 562, 697, 768, 771
Mph1103I	ATGCAT	2 cut(s)	561, 594
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	2 cut(s)	488, 632
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeI	CATATG	2 cut(s)	594, 687
NdeII	GATC	3 cut(s)	406, 550, 727
NlaIII	CATG	8 cut(s)	223, 487, 520, 527, 559, 568, 631, 683
NmuCI	GTSAC	1 cut(s)	116
NsbI	TGCGCA	1 cut(s)	207
NsiI	ATGCAT	2 cut(s)	561, 594
NspI	RCATGY	3 cut(s)	520, 527, 559
PaeI	GCATGC	2 cut(s)	520, 527
PagI	TCATGA	1 cut(s)	679
PctI	GAATGC	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	253, 279, 754
PflFI	GACNNNGTC	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	698
PleI	GAGTC	2 cut(s)	149, 197
PpsI	GAGTC	2 cut(s)	149, 197
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	2 cut(s)	159, 414
PspGI	CCWGG	1 cut(s)	378
PsyI	GACNNNGTC	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	488, 632
SaqAI	TTAA	1 cut(s)	777
Sau3AI	GATC	3 cut(s)	406, 550, 727
SchI	GAGTC	2 cut(s)	149, 198
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	7 cut(s)	18, 96, 199, 402, 547, 582, 604
SfaNI	GCATC	3 cut(s)	115, 579, 702
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	488, 632
SmlI	CTYRAG	2 cut(s)	268, 302
SmoI	CTYRAG	2 cut(s)	268, 302
SphI	GCATGC	2 cut(s)	520, 527
Sse9I	AATT	2 cut(s)	168, 778
SsiI	CCGC	3 cut(s)	647, 725, 771
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	393, 473
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	168, 778
TauI	GCSGC	2 cut(s)	649, 774
TfiI	GAWTC	3 cut(s)	253, 279, 754
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	4 cut(s)	396, 478, 626, 666
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	8 cut(s)	477, 510, 513, 520, 527, 577, 599, 610
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	5 cut(s)	101, 467, 506, 616, 653
TspRI	CASTG	4 cut(s)	396, 478, 626, 666
Tth111I	GACNNNGTC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	3 cut(s)	520, 527, 559
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 362
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	2 cut(s)	561, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.