Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

37468750 .. 37469298

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCCAGAAAGAAAGTGAGAATGGCTTACATCACCAACAATTCAGCAAGGAAAACTACATTCAAGAAAAGGAAAAAGGGTATGATGAAGAAGTTGAGCGAATTGAGCACTCTCTGTGGAGTTGATGCATGTGCTGTTATTTACAGCCCATTTGATTCTCAACCTGAGGTTTGGCCTTCTCCATCTAGAGTCAAAAATGTTTTTGAGAAATTCAAGAACATGCCTATGATAGAGAAGAGCCAAAAGATGTTGAACCAAGAAAGCTTTCTGAGGGGGATGATATCTAAAACGAATGAGCAACTGAAGAAAGTAAGAAAGCAAAATCATGAGAAGGAATTGAGACATACCATGTTCCAAAGTCTCACTACAGGAATTCCCCAATTCCAGAATCTGAATCTGATGGATATGGGTGATCTTGAGCAGCTTATCAACCAGAAATTGGATGAGATTGATAGAAGAATAGAGAATCTCGGTGAGGAGGTGATCGAAAATGAAACCAAAATGTCCAAGTTGCATAATAATGCATGCGAAGGAATCCATGGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

182

Amino Acids

21.18

Weight (kDa)

9.58

Isoelectric Point (pI)

57.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	1.6e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	209, 372
AcuI	CTGAAG	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	64, 214, 253
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	2 cut(s)	264, 424
AluI	AGCT	2 cut(s)	264, 424
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	334, 365
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	3, 173
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	2 cut(s)	209, 372
Asp700I	GAANNNNTTC	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	25, 422, 485, 493
AxyI	CCTNAGG	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	190, 394
BcoDI	GTCTC	2 cut(s)	334, 365
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmsI	GCATC	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse21I	CCTNAGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	2 cut(s)	282, 448
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	156, 260
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	433
BshFI	GGCC	2 cut(s)	5, 175
BsiHKAI	GWGCWC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	334, 365
BsnI	GGCC	2 cut(s)	5, 175
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	412, 483
Bsp19I	CCATGG	1 cut(s)	538
BspANI	GGCC	2 cut(s)	5, 175
BspCNI	CTCAG	2 cut(s)	157, 261
BspHI	TCATGA	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	2 cut(s)	412, 483
BssT1I	CCWWGG	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	165, 269
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	282, 448
BstKTI	GATC	2 cut(s)	415, 486
BstMAI	GTCTC	2 cut(s)	334, 365
BstMBI	GATC	2 cut(s)	412, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	4 cut(s)	132, 223, 528, 547
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	5, 175
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	282, 448
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	391
CciI	TCATGA	1 cut(s)	325
CviAII	CATG	7 cut(s)	129, 220, 326, 349, 525, 539, 544
CviJI	RGCY	7 cut(s)	5, 26, 147, 175, 240, 264, 424
CviKI_1	RGCY	7 cut(s)	5, 26, 147, 175, 240, 264, 424
DdeI	CTNAG	2 cut(s)	165, 269
DpnI	GATC	2 cut(s)	414, 485
DpnII	GATC	2 cut(s)	412, 483
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	538
Eco32I	GATATC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	2 cut(s)	130, 526
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	7 cut(s)	132, 223, 329, 352, 528, 542, 547
FatI	CATG	7 cut(s)	128, 219, 325, 348, 524, 538, 543
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	2 cut(s)	289, 455
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	5, 175
Hin1II	CATG	7 cut(s)	132, 223, 329, 352, 528, 542, 547
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	6 cut(s)	155, 189, 388, 394, 466, 534
HphI	GGTGA	4 cut(s)	25, 422, 485, 493
Hpy188I	TCNGA	3 cut(s)	270, 393, 399
Hpy188III	TCNNGA	6 cut(s)	64, 186, 214, 326, 385, 416
HpyAV	CCTTC	3 cut(s)	186, 325, 524
HpyCH4V	TGCA	3 cut(s)	128, 514, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	165, 269
Hsp92II	CATG	7 cut(s)	132, 223, 329, 352, 528, 542, 547
Kzo9I	GATC	2 cut(s)	412, 483
LguI	GCTCTTC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	19, 177, 354, 398, 446
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	186
MalI	GATC	2 cut(s)	414, 485
MboI	GATC	2 cut(s)	412, 483
MboII	GAAGA	4 cut(s)	100, 247, 316, 468
MhlI	GDGCHC	1 cut(s)	110
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	40, 101, 209, 335, 372, 380, 437
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	160, 264, 469, 472
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	130, 526
MroXI	GAANNNNTTC	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	224, 519
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	538
NdeII	GATC	2 cut(s)	412, 483
NlaIII	CATG	7 cut(s)	132, 223, 329, 352, 528, 542, 547
NsiI	ATGCAT	2 cut(s)	130, 526
NspI	RCATGY	4 cut(s)	132, 223, 528, 547
PaeI	GCATGC	1 cut(s)	528
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	5 cut(s)	155, 388, 394, 466, 534
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	391
RseI	CAYNNNNRTG	2 cut(s)	224, 519
SapI	GCTCTTC	1 cut(s)	230
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	2 cut(s)	412, 483
SchI	GAGTC	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	5 cut(s)	166, 171, 266, 426, 483
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	224, 519
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	7 cut(s)	40, 101, 209, 335, 372, 380, 437
SspMI	CTAG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	538
TaqI	TCGA	1 cut(s)	486
TasI	AATT	7 cut(s)	40, 101, 209, 335, 372, 380, 437
TfiI	GAWTC	5 cut(s)	155, 388, 394, 466, 534
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	101, 507
Van91I	CCANNNNNTGG	1 cut(s)	439
XapI	RAATTY	2 cut(s)	209, 372
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	4 cut(s)	132, 223, 528, 547
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	2 cut(s)	130, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.