Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

29747538 .. 29748392

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG135700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTAGAAGAAAACAGAGAATGGCCTATATCACCAACAATTCAGCCAGAAAAACTACATTCAAGAAAAGGAAAAACAATATGATGAAGAAGTTGAGAGAACTAAGTACTCTTTGTGGAATTGAAGCATGTGCAATAATTTACAGCCCATTTGATTTTGAACCAGAGGTTTGGCCTTCTTCTTATGCAATTGAAAATGCTCTGAAAAAGTTAAAGGATATGCCTGCGATAGAGAAGAGTAGGAAGATGTTGAGCCAAGAAAGCTATCTGAAGGGGATGATCTCTAAAGCATACGCAAAGTTAAAGAGAGTGAGAAGGGAAAATCATGAGAAGGAATTGAGAGCTGTCATGTTCCAAAGTCTCACCAAAGGAATTCCTCAATTCCAAAATCTGAACCTGATGGATATGGATGATCTTGGGCGGCTTATCAACCAAAAATTGAATGAGATTGATAACAAAAAAAAGAGTCTCAGTGAGGAGGTGACCGAAAGTCAGAACCAGACTATCCAACTTACTCCAATAGTGAACATGGTGAATCCAAATCCTCACCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

185

Amino Acids

21.58

Weight (kDa)

9.85

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	9.5e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	109
AgsI	TTSAA	5 cut(s)	64, 125, 161, 194, 442
AhdI	GACNNNNNGTC	1 cut(s)	489
AluBI	AGCT	2 cut(s)	264, 344
AluI	AGCT	2 cut(s)	264, 344
Alw26I	GTCTC	2 cut(s)	365, 473
AoxI	GGCC	2 cut(s)	24, 173
ApoI	RAATTY	1 cut(s)	372
AsuHPI	GGTGA	5 cut(s)	25, 355, 493, 539, 544
BccI	CCATC	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	365, 473
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmcAI	AGTACT	1 cut(s)	109
BmeRI	GACNNNNNGTC	1 cut(s)	489
BseGI	GGATG	2 cut(s)	282, 415
BseMII	CTCAG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	491
BshFI	GGCC	2 cut(s)	26, 175
BsmAI	GTCTC	2 cut(s)	365, 473
BsnI	GGCC	2 cut(s)	26, 175
Bsp143I	GATC	2 cut(s)	279, 412
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	2 cut(s)	26, 175
BspCNI	CTCAG	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	325
BssMI	GATC	2 cut(s)	279, 412
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	104, 470
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	282, 415
BstKTI	GATC	2 cut(s)	282, 415
BstMAI	GTCTC	2 cut(s)	365, 473
BstMBI	GATC	2 cut(s)	279, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	481
BstXI	CCANNNNNNTGG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	26, 175
BtsCI	GGATG	2 cut(s)	282, 415
BtsIMutI	CAGTG	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	4 cut(s)	129, 326, 349, 529
CviJI	RGCY	9 cut(s)	5, 26, 47, 147, 175, 255, 264, 344, 424
CviKI_1	RGCY	9 cut(s)	5, 26, 47, 147, 175, 255, 264, 344, 424
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	2 cut(s)	104, 470
DpnI	GATC	2 cut(s)	281, 414
DpnII	GATC	2 cut(s)	279, 412
DriI	GACNNNNNGTC	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	230
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	372
FaeI	CATG	4 cut(s)	132, 329, 352, 532
FatI	CATG	4 cut(s)	128, 325, 348, 528
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	2 cut(s)	289, 422
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	26, 175
Hin1II	CATG	4 cut(s)	132, 329, 352, 532
HinfI	GANTC	2 cut(s)	466, 535
HphI	GGTGA	5 cut(s)	25, 355, 493, 539, 544
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	4 cut(s)	204, 270, 393, 495
Hpy188III	TCNNGA	2 cut(s)	64, 326
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	4 cut(s)	186, 265, 309, 325
HpyCH4V	TGCA	2 cut(s)	134, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	2 cut(s)	104, 470
Hsp92II	CATG	4 cut(s)	132, 329, 352, 532
Kzo9I	GATC	2 cut(s)	279, 412
LpnPI	CCDG	5 cut(s)	61, 177, 237, 410, 512
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	281, 414
MboI	GATC	2 cut(s)	279, 412
MboII	GAAGA	5 cut(s)	21, 100, 171, 247, 256
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	8 cut(s)	40, 120, 138, 189, 335, 372, 380, 437
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	5 cut(s)	160, 387, 469, 472, 555
MseI	TTAA	2 cut(s)	212, 302
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeII	GATC	2 cut(s)	279, 412
NlaIII	CATG	4 cut(s)	132, 329, 352, 532
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	1 cut(s)	132
PagI	TCATGA	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PspEI	GGTNACC	1 cut(s)	481
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	212, 302
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	2 cut(s)	279, 412
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	1 cut(s)	475
SetI	ASST	5 cut(s)	171, 266, 346, 399, 483
Sse9I	AATT	8 cut(s)	40, 120, 138, 189, 335, 372, 380, 437
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	6
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	8 cut(s)	40, 120, 138, 189, 335, 372, 380, 437
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	2 cut(s)	212, 302
Tru9I	TTAA	2 cut(s)	212, 302
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	132
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.