Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

24789979 .. 24790434

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24035

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTAGAAGAAAGTTGAGACTGCAGTACATCGCCAATGCGTGTTCCAGAAGAAACACATTTAAGAAAAGAAATAAGGGCCTTCTGAAGAAGGTATACGAGATTACCGCTCTCTGTGACATCAAGGCTGCGGCGGTCATCTATAGTCCCTTTGAAGTCGAGTCGAAGGTCTTCCCAAGTCATCCAGAAGTCCACCAAATGCTAACAAGGTTCCAAGATATGCCGGAGATGGACAAGACAAGAAATATGGTCAATCAGGAGACCTTCTTACGACAACAAATAGACAAAATCCAAGAGAAAATCATAAAGCTGAAAAGAGACAACCAGGAGAAGCAGATCACTCAAGTCATGTTCGACTGCTTGAAGGGGAAAACCCTATCTGATCTTGAATTGAAGGATCTGAGTGACCTCACTTTTATAATCGAACAGAACCTCAAGGAGTTAGATATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

151

Amino Acids

17.88

Weight (kDa)

9.44

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	3.9e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	3 cut(s)	108, 131, 134
AclWI	GGATC	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	155, 364, 389, 394
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw26I	GTCTC	3 cut(s)	13, 254, 312
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	326
BcoDI	GTCTC	3 cut(s)	13, 254, 312
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	2 cut(s)	23, 142
BisI	GCNGC	2 cut(s)	129, 132
BlsI	GCNGC	2 cut(s)	130, 133
Bme1390I	CCNGG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	327, 419
BsaI	GGTCTC	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	132
BsmAI	GTCTC	3 cut(s)	13, 254, 312
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	81
Bso31I	GGTCTC	1 cut(s)	254
Bsp143I	GATC	3 cut(s)	336, 382, 397
BspACI	CCGC	3 cut(s)	108, 131, 134
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	110
BssMI	GATC	3 cut(s)	336, 382, 397
BssNAI	GTATAC	1 cut(s)	97
Bst1107I	GTATAC	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	3 cut(s)	339, 385, 400
BstMAI	GTCTC	3 cut(s)	13, 254, 312
BstMBI	GATC	3 cut(s)	336, 382, 397
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	2 cut(s)	23, 142
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BstZ17I	GTATAC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	4 cut(s)	5, 81, 128, 310
CviKI_1	RGCY	4 cut(s)	5, 81, 128, 310
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	3 cut(s)	338, 384, 399
DpnII	GATC	3 cut(s)	336, 382, 397
Eco31I	GGTCTC	1 cut(s)	254
Eco32I	GATATC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	448
FaeI	CATG	1 cut(s)	352
FaiI	YATR	7 cut(s)	97, 144, 221, 248, 305, 350, 419
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	129, 132
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	129, 132
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	129, 132
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	1 cut(s)	352
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	97, 193
Hpy188I	TCNGA	3 cut(s)	87, 382, 402
Hpy188III	TCNNGA	4 cut(s)	48, 185, 257, 386
Hpy8I	GTNNAC	2 cut(s)	97, 193
HpyAV	CCTTC	6 cut(s)	85, 92, 160, 274, 358, 388
HpyCH4V	TGCA	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	401
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	336, 382, 397
LpnPI	CCDG	6 cut(s)	61, 198, 237, 242, 311, 338
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	116, 404
MalI	GATC	3 cut(s)	338, 384, 399
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	3 cut(s)	336, 382, 397
MboII	GAAGA	4 cut(s)	21, 63, 100, 163
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	419, 443
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
NdeII	GATC	3 cut(s)	336, 382, 397
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	116, 404
PdmI	GAANNNNTTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	130, 133
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	129, 132
Sau3AI	GATC	3 cut(s)	336, 382, 397
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	7 cut(s)	96, 171, 212, 266, 312, 411, 435
SfcI	CTRYAG	2 cut(s)	23, 142
SmlI	CTYRAG	2 cut(s)	342, 434
SmoI	CTYRAG	2 cut(s)	342, 434
Sse9I	AATT	1 cut(s)	389
SsiI	CCGC	3 cut(s)	108, 131, 134
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	324
TaqI	TCGA	4 cut(s)	159, 164, 354, 423
TasI	AATT	1 cut(s)	389
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	2 cut(s)	116, 404
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	2 cut(s)	116, 404
XmiI	GTMKAC	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.