Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

20719727 .. 20720368

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACTAAAAGGAAGCTAAAACTAGCCTTCATCGAGAACGACTCGTCGCGAAAAGCGACATTCAGGAAAAGGAGGACGGGCTTCATGAAGAAGATGTATGAAATCAATAAACTTTGTGATGTCCCAACATGTGCTATCATGTATAGTCCAGATCAGCCTCAACCTGATGTCTGGCCTGATCCTTCGGAGGTGCGACGCCTCATCGAGCTGTTTAAGAACGTGCCTGAGAAGGAGCGAAACAAAAAGATGGTGACCCATGGGATGTTTCTGAAGCAGAGGATCGAAAAGGAGCAGGAGAAGCTGAACAAGTTGAAGAAAGACAACCGAGAGAAAGAACTTCGGATGGCCATGAGCCAATGCCTCGCGGGGAAACCCTTAAATGGCCTGGACTTCACCAATTTACAGGAAATGGGGTGGATGATCGACGAGAAGTTGAAGGACATTGCCGTGACAAAGTGCCGAAAGGAGAACGAGCTGGCAGAGATAAATCAACCCTTAGTTGGACAACCACCAGCGCATGCAACATCAGCTGATGAGAACACTCAAGACGCCATACAACTGGCTCCATGGTCTGTGGGGGGCGTGCGGAGCTCAAAATTTGGTGAAGTGGATGATCAGATAATGCCGCTTGGGGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

214

Amino Acids

24.6

Weight (kDa)

9.06

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	1.6e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	49, 365
AciI	CCGC	3 cut(s)	365, 586, 626
AclWI	GGATC	2 cut(s)	173, 287
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	2 cut(s)	196, 549
AfiI	CCNNNNNNNGG	2 cut(s)	380, 500
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	313, 436
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	6 cut(s)	16, 208, 301, 475, 530, 591
AluI	AGCT	6 cut(s)	16, 208, 301, 475, 530, 591
Alw21I	GWGCWC	1 cut(s)	593
AlwI	GGATC	2 cut(s)	173, 287
AoxI	GGCC	3 cut(s)	173, 345, 382
ApoI	RAATTY	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	517
AsuHPI	GGTGA	3 cut(s)	262, 385, 614
BalI	TGGCCA	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	593
BccI	CCATC	2 cut(s)	241, 337
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	613
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	386
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpuEI	CTTGAG	1 cut(s)	528
BsaHI	GRCGYC	2 cut(s)	196, 549
BsaJI	CCNNGG	2 cut(s)	256, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 500
Bse1I	ACTGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	256, 566
BseGI	GGATG	4 cut(s)	267, 348, 423, 616
BseLI	CCNNNNNNNGG	2 cut(s)	380, 500
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	564
Bsh1236I	CGCG	2 cut(s)	49, 365
BshFI	GGCC	3 cut(s)	175, 347, 384
BsiHKAI	GWGCWC	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	380, 500
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	175, 347, 384
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	5 cut(s)	151, 178, 279, 420, 613
Bsp19I	CCATGG	2 cut(s)	256, 566
Bsp68I	TCGCGA	1 cut(s)	49
BspACI	CCGC	3 cut(s)	365, 586, 626
BspANI	GGCC	3 cut(s)	175, 347, 384
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	49, 365
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	2 cut(s)	173, 287
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	564
BssECI	CCNNGG	2 cut(s)	256, 566
BssMI	GATC	5 cut(s)	151, 178, 279, 420, 613
BssNI	GRCGYC	2 cut(s)	196, 549
BssT1I	CCWWGG	2 cut(s)	256, 566
Bst2UI	CCWGG	1 cut(s)	386
BstACI	GRCGYC	2 cut(s)	196, 549
BstC8I	GCNNGC	3 cut(s)	477, 519, 584
BstDEI	CTNAG	2 cut(s)	225, 496
BstDSI	CCRYGG	2 cut(s)	256, 566
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	4 cut(s)	267, 348, 423, 616
BstFNI	CGCG	2 cut(s)	49, 365
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	5 cut(s)	154, 181, 282, 423, 616
BstMBI	GATC	5 cut(s)	151, 178, 279, 420, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 527, 588
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	2 cut(s)	132, 521
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	384
BstUI	CGCG	2 cut(s)	49, 365
BstXI	CCANNNNNNTGG	1 cut(s)	559
BsuRI	GGCC	3 cut(s)	175, 347, 384
BtgI	CCRYGG	2 cut(s)	256, 566
BtsCI	GGATG	4 cut(s)	267, 348, 423, 616
BtuMI	TCGCGA	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	477, 519, 584
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	517
CseI	GACGC	2 cut(s)	204, 557
CviAII	CATG	7 cut(s)	85, 129, 139, 257, 349, 518, 567
DdeI	CTNAG	2 cut(s)	225, 496
DpnI	GATC	5 cut(s)	153, 180, 281, 422, 615
DpnII	GATC	5 cut(s)	151, 178, 279, 420, 613
EaeI	YGGCCR	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	591
Eco130I	CCWWGG	2 cut(s)	256, 566
Eco24I	GRGCYC	1 cut(s)	593
Eco53kI	GAGCTC	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	591
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	2 cut(s)	256, 566
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	2 cut(s)	256, 566
FaeI	CATG	7 cut(s)	88, 132, 142, 260, 352, 521, 570
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	7 cut(s)	84, 128, 138, 256, 348, 517, 566
FauI	CCCGC	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	4 cut(s)	274, 355, 430, 623
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	626
HaeIII	GGCC	3 cut(s)	175, 347, 384
HgaI	GACGC	2 cut(s)	204, 557
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	2 cut(s)	196, 549
Hin1II	CATG	7 cut(s)	88, 132, 142, 260, 352, 521, 570
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	3 cut(s)	262, 385, 614
Hpy188I	TCNGA	4 cut(s)	187, 270, 342, 618
Hpy188III	TCNNGA	6 cut(s)	34, 48, 64, 85, 149, 545
Hpy99I	CGWCG	3 cut(s)	49, 198, 428
HpyAV	CCTTC	4 cut(s)	37, 192, 223, 430
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 527, 588
HpyF3I	CTNAG	2 cut(s)	225, 496
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	2 cut(s)	196, 549
Hsp92II	CATG	7 cut(s)	88, 132, 142, 260, 352, 521, 570
HspAI	GCGC	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	5 cut(s)	151, 178, 279, 420, 613
LmnI	GCTCC	4 cut(s)	232, 289, 568, 588
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	250, 448
MalI	GATC	5 cut(s)	153, 180, 281, 422, 615
MboI	GATC	5 cut(s)	151, 178, 279, 420, 613
MboII	GAAGA	3 cut(s)	100, 103, 325
MhlI	GDGCHC	1 cut(s)	593
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	2 cut(s)	397, 596
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	6 cut(s)	66, 168, 181, 209, 270, 371
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	2 cut(s)	213, 377
MslI	CAYNNNNRTG	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	2 cut(s)	49, 365
MwoI	GCNNNNNNNGC	3 cut(s)	298, 527, 588
NcoI	CCATGG	2 cut(s)	256, 566
NdeII	GATC	5 cut(s)	151, 178, 279, 420, 613
NlaIII	CATG	7 cut(s)	88, 132, 142, 260, 352, 521, 570
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	2 cut(s)	250, 448
NruI	TCGCGA	1 cut(s)	49
NspI	RCATGY	2 cut(s)	132, 521
PaeI	GCATGC	1 cut(s)	521
PagI	TCATGA	1 cut(s)	84
PciI	ACATGT	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	384
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	564
PvuII	CAGCTG	1 cut(s)	530
RruI	TCGCGA	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	213, 377
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	5 cut(s)	151, 178, 279, 420, 613
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	9 cut(s)	18, 166, 192, 210, 222, 303, 477, 532, 593
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	2 cut(s)	397, 596
SsiI	CCGC	3 cut(s)	365, 586, 626
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	2 cut(s)	256, 566
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	4 cut(s)	33, 204, 282, 423
TasI	AATT	2 cut(s)	397, 596
TauI	GCSGC	1 cut(s)	628
Tru1I	TTAA	2 cut(s)	213, 377
Tru9I	TTAA	2 cut(s)	213, 377
TseFI	GTSAC	2 cut(s)	250, 448
Tsp45I	GTSAC	2 cut(s)	250, 448
TspDTI	ATGAA	4 cut(s)	19, 73, 101, 114
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	2 cut(s)	132, 521
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.