Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

20723899 .. 20724576

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGGGAGGAAGAAGGTGAAACTAGCCTACATCATCAACGACGCATGTCGAAAAGCATCATACAATAAAAGGAAGAAGGGCTTCGTGAAGAAGATGAAGGAAATTAGTATTCTTTGTGATGTTCCAGTATGTGGTATTCTGTACAGTCAATATGAGTCTCAACCTATTGTCTGGCCCAATCCTTTAGAAGTGCAACGCCTCATCACGCAGTTCAGGAACATGCCTGAGGAGGAGCGGAATAAAAAAATGGTGAACCATGAGATGTTTCTGAAGCAGAGGATCGAAAAGGAGCAAGAGAAGCTGAACAAGCTGAAGAAAGAGAACCGGGAGAAGCAAATACGGATGCTCATGAACCAGTGCCTCGCTGGGAGGCCCCTTACTGATTTGAACTTAGACGCTTTGAATGATTTGGACTGTATGATCAAGGGGAGCTTGACAGAGATTGTCACACAGATCAAGAGCCGGAAGGAGAAGGAACTGGGGGAGATGAACCAACCCCAAGTCGCACCACCACAAGTGCTTGCAGCCACAACTGATCAGAACATGCATGCAGCAATGGAAACGCAGGTGTTTGATCAAAGCAACATATACACCAAGCAGACGGTTCCATGGTTCCTTGGGGACGTGCCATACCAACAATTCGGTTTTGCTGATGATCAGATCCCACCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

226

Amino Acids

26.15

Weight (kDa)

9.09

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 51	5.1e-12	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	2 cut(s)	290, 658
AcuI	CTGAAG	2 cut(s)	293, 335
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	391, 406
AjiI	CACGTC	1 cut(s)	628
AluBI	AGCT	3 cut(s)	304, 313, 435
AluI	AGCT	3 cut(s)	304, 313, 435
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	290, 658
AoxI	GGCC	2 cut(s)	176, 374
ApeKI	GCWGC	2 cut(s)	527, 554
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	177, 375
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	31, 265
AxyI	CCTNAGG	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	539, 566
BclI	TGATCA	4 cut(s)	423, 538, 577, 658
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	559
BisI	GCNGC	2 cut(s)	528, 555
BlsI	GCNGC	2 cut(s)	529, 556
Bme1390I	CCNGG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	177, 375
BmiI	GGNNCC	3 cut(s)	377, 609, 617
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	2 cut(s)	68, 336
BmuI	ACTGGG	1 cut(s)	491
BoxI	GACNNNNGTC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	611, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	3 cut(s)	128, 358, 486
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	611, 619
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	3 cut(s)	128, 358, 486
BseRI	GAGGAG	2 cut(s)	245, 248
BseXI	GCAGC	2 cut(s)	539, 566
BseYI	CCCAGC	2 cut(s)	5, 368
BshFI	GGCC	2 cut(s)	178, 376
BsiSI	CCGG	2 cut(s)	328, 466
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	178, 376
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	7 cut(s)	282, 423, 456, 538, 577, 658, 663
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	2 cut(s)	178, 376
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	377, 609, 617
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	290, 658
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	564
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	3 cut(s)	128, 358, 486
BssECI	CCNNGG	2 cut(s)	611, 619
BssMI	GATC	7 cut(s)	282, 423, 456, 538, 577, 658, 663
BssT1I	CCWWGG	2 cut(s)	611, 619
Bst4CI	ACNGT	3 cut(s)	149, 419, 607
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	525, 552
BstDEI	CTNAG	2 cut(s)	228, 394
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	7 cut(s)	285, 426, 459, 541, 580, 661, 666
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	7 cut(s)	282, 423, 456, 538, 577, 658, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 310
BstNSI	RCATGY	4 cut(s)	51, 226, 550, 554
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	539, 566
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	178, 376
BtgI	CCRYGG	1 cut(s)	611
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	525, 552
CciI	TCATGA	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	177, 375
CseI	GACGC	2 cut(s)	53, 407
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	7 cut(s)	48, 223, 260, 352, 547, 551, 612
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	228, 394
DpnI	GATC	7 cut(s)	284, 425, 458, 540, 579, 660, 665
DpnII	GATC	7 cut(s)	282, 423, 456, 538, 577, 658, 663
Eco130I	CCWWGG	2 cut(s)	611, 619
Eco57I	CTGAAG	2 cut(s)	293, 335
Eco81I	CCTNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	611, 619
EcoT22I	ATGCAT	1 cut(s)	552
ErhI	CCWWGG	2 cut(s)	611, 619
FaeI	CATG	7 cut(s)	51, 226, 263, 355, 550, 554, 615
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 419, 451
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	7 cut(s)	47, 222, 259, 351, 546, 550, 611
FbaI	TGATCA	4 cut(s)	423, 538, 577, 658
Fnu4HI	GCNGC	2 cut(s)	528, 555
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	528, 555
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	2 cut(s)	528, 555
GsaI	CCCAGC	2 cut(s)	9, 372
HaeIII	GGCC	2 cut(s)	178, 376
HapII	CCGG	2 cut(s)	328, 466
HgaI	GACGC	2 cut(s)	53, 407
Hin1II	CATG	7 cut(s)	51, 226, 263, 355, 550, 554, 615
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	328, 466
HphI	GGTGA	2 cut(s)	31, 265
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	273, 543, 663
Hpy188III	TCNNGA	4 cut(s)	88, 217, 352, 460
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	5 cut(s)	10, 73, 94, 463, 469
HpyCH4III	ACNGT	3 cut(s)	149, 419, 607
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	4 cut(s)	196, 527, 550, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 310
HpyF3I	CTNAG	2 cut(s)	228, 394
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	7 cut(s)	51, 226, 263, 355, 550, 554, 615
Ksp22I	TGATCA	4 cut(s)	423, 538, 577, 658
Kzo9I	GATC	7 cut(s)	282, 423, 456, 538, 577, 658, 663
LmnI	GCTCC	3 cut(s)	235, 292, 432
Lsp1109I	GCAGC	2 cut(s)	539, 566
LweI	GCATC	2 cut(s)	68, 336
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	7 cut(s)	284, 425, 458, 540, 579, 660, 665
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	7 cut(s)	282, 423, 456, 538, 577, 658, 663
MboII	GAAGA	5 cut(s)	25, 88, 103, 106, 328
MflI	RGATCY	1 cut(s)	663
MluCI	AATT	2 cut(s)	105, 641
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	7 cut(s)	3, 212, 223, 226, 273, 366, 374
Mph1103I	ATGCAT	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	83
MspI	CCGG	2 cut(s)	328, 466
MspR9I	CCNGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	301, 310
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	7 cut(s)	282, 423, 456, 538, 577, 658, 663
NlaIII	CATG	7 cut(s)	51, 226, 263, 355, 550, 554, 615
NlaIV	GGNNCC	3 cut(s)	377, 609, 617
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	4 cut(s)	51, 226, 550, 554
PaeI	GCATGC	1 cut(s)	554
PagI	TCATGA	1 cut(s)	351
PaqCI	CACCTGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	529, 556
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	48
PspFI	CCCAGC	2 cut(s)	5, 368
PspN4I	GGNNCC	3 cut(s)	377, 609, 617
PspPI	GGNCC	2 cut(s)	177, 375
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	2 cut(s)	528, 555
Sau3AI	GATC	7 cut(s)	282, 423, 456, 538, 577, 658, 663
Sau96I	GGNCC	2 cut(s)	177, 375
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	7 cut(s)	21, 169, 306, 315, 437, 573, 630
SfaNI	GCATC	2 cut(s)	68, 336
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	2 cut(s)	105, 641
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	2 cut(s)	611, 619
TaaI	ACNGT	3 cut(s)	149, 419, 607
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	2 cut(s)	52, 285
TasI	AATT	2 cut(s)	105, 641
TatI	WGTACW	1 cut(s)	144
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	527, 554
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	113, 368, 506
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	134
XceI	RCATGY	4 cut(s)	51, 226, 550, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.