Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

27961416 .. 27961973

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56425

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTAGAAGAAAACAGAGAATGGCCTGTATCACCAACAATTCAGCCAGAAAAACTACATTCAAGAAAAGGAAAAACAATATGATGAAGAAGTTGAGAGAACTAAGTACTCTTTGTGGAATTGAAGCATGTGCAATAATTTACAGCCCATTTGATTTTGAACCCGAGGTTTGGCCTTCTTCTTATGCAATTGAAAATGCTCTGAAAAAGTTAAAGGATATGCCTGCGATAGAGAAGAGTAGGAAGATGTTGAGCCAAGAAAGCTATCTGAAGGGGATGATCTCTAAAGCATACGCAAAGTTAAAGAGAGTGAGAAGGGAAAATCATGAGAAGGAATTGAAAGCTGTCATGTTCCAAAGTCTCACCAAAGGAATTCCTCAATTCCAAAATCTGAACTTGATGGATATGGATGATCTTGGGCGGCTTATCATCCAAAAATTGAATGAGATTGATAACAAAAAAAAGAGTCTCCGTGAGGAGGTGACCGAAAGTCAGAACCAGACTATCCAACTTACTCCAATAGTGAACATGGTGAATCCAAATCCTCACCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

185

Amino Acids

21.56

Weight (kDa)

9.86

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 50	2.5e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	171, 478
AgsI	TTSAA	6 cut(s)	64, 125, 161, 194, 340, 442
AhdI	GACNNNNNGTC	1 cut(s)	489
AluBI	AGCT	2 cut(s)	264, 344
AluI	AGCT	2 cut(s)	264, 344
Alw26I	GTCTC	2 cut(s)	365, 473
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	24, 173
ApoI	RAATTY	1 cut(s)	372
AsuHPI	GGTGA	5 cut(s)	25, 355, 493, 539, 544
AvaI	CYCGRG	1 cut(s)	164
BccI	CCATC	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	365, 473
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmcAI	AGTACT	1 cut(s)	109
BmeRI	GACNNNNNGTC	1 cut(s)	489
BmeT110I	CYCGRG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 478
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	282, 415, 429
BseLI	CCNNNNNNNGG	2 cut(s)	171, 478
BseRI	GAGGAG	1 cut(s)	491
BshFI	GGCC	2 cut(s)	26, 175
BsiHKCI	CYCGRG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	171, 478
BsmAI	GTCTC	2 cut(s)	365, 473
BsnI	GGCC	2 cut(s)	26, 175
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	279, 412
BspACI	CCGC	1 cut(s)	421
BspANI	GGCC	2 cut(s)	26, 175
BspHI	TCATGA	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	2 cut(s)	279, 412
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	104
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	3 cut(s)	282, 415, 429
BstKTI	GATC	2 cut(s)	282, 415
BstMAI	GTCTC	2 cut(s)	365, 473
BstMBI	GATC	2 cut(s)	279, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	132
BstPI	GGTNACC	1 cut(s)	481
BsuRI	GGCC	2 cut(s)	26, 175
BtsCI	GGATG	3 cut(s)	282, 415, 429
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	4 cut(s)	129, 326, 349, 529
CviJI	RGCY	9 cut(s)	5, 26, 47, 147, 175, 255, 264, 344, 424
CviKI_1	RGCY	9 cut(s)	5, 26, 47, 147, 175, 255, 264, 344, 424
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	281, 414
DpnII	GATC	2 cut(s)	279, 412
DriI	GACNNNNNGTC	1 cut(s)	489
Eam1104I	CTCTTC	1 cut(s)	230
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	372
FaeI	CATG	4 cut(s)	132, 329, 352, 532
FatI	CATG	4 cut(s)	128, 325, 348, 528
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	3 cut(s)	289, 416, 422
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	26, 175
Hin1II	CATG	4 cut(s)	132, 329, 352, 532
HinfI	GANTC	2 cut(s)	466, 535
HphI	GGTGA	5 cut(s)	25, 355, 493, 539, 544
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	4 cut(s)	204, 270, 393, 495
Hpy188III	TCNNGA	2 cut(s)	64, 326
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	4 cut(s)	186, 265, 309, 325
HpyCH4V	TGCA	2 cut(s)	134, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	132, 329, 352, 532
Kzo9I	GATC	2 cut(s)	279, 412
LpnPI	CCDG	4 cut(s)	40, 61, 237, 512
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	281, 414
MboI	GATC	2 cut(s)	279, 412
MboII	GAAGA	5 cut(s)	21, 100, 171, 247, 256
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	8 cut(s)	40, 120, 138, 189, 335, 372, 380, 437
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	5 cut(s)	160, 387, 469, 472, 555
MseI	TTAA	2 cut(s)	212, 302
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeII	GATC	2 cut(s)	279, 412
NlaIII	CATG	4 cut(s)	132, 329, 352, 532
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	1 cut(s)	132
PagI	TCATGA	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PspEI	GGTNACC	1 cut(s)	481
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	212, 302
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	2 cut(s)	279, 412
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	1 cut(s)	475
SetI	ASST	4 cut(s)	171, 266, 346, 483
Sse9I	AATT	8 cut(s)	40, 120, 138, 189, 335, 372, 380, 437
SsiI	CCGC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	6
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	8 cut(s)	40, 120, 138, 189, 335, 372, 380, 437
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	2 cut(s)	212, 302
Tru9I	TTAA	2 cut(s)	212, 302
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	461
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	132
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.