Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002096.1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

128238 .. 129627

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002096.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaagacaatttccagggcggcggcggcagagccggaggaagagctcggcgtcatagagaagagggaatgtggcgcagaggaatgggatcttggtttctctcagaaatcgaagccagaaagcaaccaagaatttctgctttgctgcttgaggaacgaagagagagaggcggtgacagagaaaacgcttgttcgctttgaagatgtgagagacatagagcgatctctcgagctgggaagatatgttttgactgcagaggaggctgggaagagagaatggagacgaaaaaggaaggagggccttctgaagaaggtgtacgagatcaccactctatgtgacatcaaggctgcggcgatcatctacagtccctttgacttcgagctggaggtcttcccaagtcatttcgaagtccacgaaatgttgatgaggttccaagatatgtcggagaaggacaagacaaaaaacatggtcaaccaggaggcctttttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

163

Amino Acids

19.13

Weight (kDa)

5.06

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	20, 23, 26, 170, 350
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	2 cut(s)	14, 474
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	46, 232, 382
AluI	AGCT	3 cut(s)	46, 232, 382
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	204, 274
AlwI	GGATC	1 cut(s)	96
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	298, 480
ApeKI	GCWGC	2 cut(s)	144, 347
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	184, 316
AsuII	TTCGAA	1 cut(s)	405
AvaI	CYCGRG	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbsI	GAAGAC	2 cut(s)	11, 382
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	131, 334
BciT130I	CCWGG	2 cut(s)	16, 476
BcoDI	GTCTC	2 cut(s)	204, 274
BfmI	CTRYAG	2 cut(s)	252, 361
BisI	GCNGC	6 cut(s)	21, 24, 27, 145, 348, 351
BlsI	GCNGC	6 cut(s)	22, 25, 28, 146, 349, 352
Bme1390I	CCNGG	2 cut(s)	16, 476
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	2 cut(s)	16, 476
BpiI	GAAGAC	2 cut(s)	11, 382
BpmI	CTGGAG	1 cut(s)	404
Bpu14I	TTCGAA	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	16, 476
BseDI	CCNNGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	131, 334
BseYI	CCCAGC	2 cut(s)	232, 263
BshFI	GGCC	2 cut(s)	300, 482
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	204, 274
BsmBI	CGTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	2 cut(s)	300, 482
BsoBI	CYCGRG	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	88, 221, 321, 354
BspACI	CCGC	5 cut(s)	20, 23, 26, 170, 350
BspANI	GGCC	2 cut(s)	300, 482
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	431
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	4 cut(s)	88, 221, 321, 354
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	16, 476
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	4 cut(s)	36, 56, 153, 263
BstACI	GRCGYC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	4 cut(s)	91, 224, 324, 357
BstMAI	GTCTC	2 cut(s)	204, 274
BstMBI	GATC	4 cut(s)	88, 221, 321, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 260
BstNI	CCWGG	2 cut(s)	16, 476
BstSCI	CCNGG	2 cut(s)	14, 474
BstSFI	CTRYAG	2 cut(s)	252, 361
BstV1I	GCAGC	2 cut(s)	131, 334
BstV2I	GAAGAC	2 cut(s)	11, 382
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	300, 482
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	466
CviJI	RGCY	9 cut(s)	34, 46, 115, 232, 263, 300, 347, 382, 482
CviKI_1	RGCY	9 cut(s)	34, 46, 115, 232, 263, 300, 347, 382, 482
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	4 cut(s)	90, 223, 323, 356
DpnII	GATC	4 cut(s)	88, 221, 321, 354
Eam1104I	CTCTTC	4 cut(s)	36, 56, 153, 263
EarI	CTCTTC	4 cut(s)	36, 56, 153, 263
Ecl136II	GAGCTC	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	14, 474
EcoT38I	GRGCYC	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	1 cut(s)	469
FaiI	YATR	7 cut(s)	56, 215, 243, 334, 440, 467, 490
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	1 cut(s)	465
Fnu4HI	GCNGC	6 cut(s)	21, 24, 27, 145, 348, 351
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	6 cut(s)	21, 24, 27, 145, 348, 351
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	6 cut(s)	21, 24, 27, 145, 348, 351
GsaI	CCCAGC	2 cut(s)	236, 267
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	300, 482
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	2 cut(s)	184, 316
Hpy166II	GTNNAC	3 cut(s)	316, 412, 472
Hpy188I	TCNGA	3 cut(s)	105, 306, 445
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	3 cut(s)	316, 412, 472
HpyAV	CCTTC	4 cut(s)	286, 304, 311, 442
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 260
HpyF3I	CTNAG	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	4 cut(s)	88, 221, 321, 354
LguI	GCTCTTC	1 cut(s)	36
LpnPI	CCDG	8 cut(s)	28, 48, 129, 218, 249, 368, 461, 488
Lsp1109I	GCAGC	2 cut(s)	131, 334
MaeIII	GTNAC	2 cut(s)	172, 335
MalI	GATC	4 cut(s)	90, 223, 323, 356
MboI	GATC	4 cut(s)	88, 221, 321, 354
MboII	GAAGA	9 cut(s)	16, 53, 73, 170, 212, 249, 280, 319, 382
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	9, 131
MmeI	TCCRAC	1 cut(s)	423
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	16, 476
MvaI	CCWGG	2 cut(s)	16, 476
MwoI	GCNNNNNNNGC	2 cut(s)	26, 260
NdeII	GATC	4 cut(s)	88, 221, 321, 354
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	1 cut(s)	431
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	172, 335
NspV	TTCGAA	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	36
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PkrI	GCNGC	6 cut(s)	22, 25, 28, 146, 349, 352
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	14, 474
PspFI	CCCAGC	2 cut(s)	232, 263
PspGI	CCWGG	2 cut(s)	14, 474
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	6 cut(s)	21, 24, 27, 145, 348, 351
Sau3AI	GATC	4 cut(s)	88, 221, 321, 354
Sau96I	GGNCC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	16, 476
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	48, 234, 315, 384, 390, 431
SfcI	CTRYAG	2 cut(s)	252, 361
Sfr274I	CTCGAG	1 cut(s)	227
SfuI	TTCGAA	1 cut(s)	405
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	148, 227
SmoI	CTYRAG	2 cut(s)	148, 227
Sse9I	AATT	2 cut(s)	9, 131
SseBI	AGGCCT	1 cut(s)	482
SsiI	CCGC	5 cut(s)	20, 23, 26, 170, 350
SstI	GAGCTC	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	14, 474
TaaI	ACNGT	1 cut(s)	365
TaqI	TCGA	4 cut(s)	110, 228, 378, 405
TasI	AATT	2 cut(s)	9, 131
TauI	GCSGC	4 cut(s)	23, 26, 29, 353
TseFI	GTSAC	2 cut(s)	172, 335
TseI	GCWGC	2 cut(s)	144, 347
Tsp45I	GTSAC	2 cut(s)	172, 335
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.