Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

24076035 .. 24076673

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTAGAAAGAAGGTGAGACTGCACTATATTACCAATGAGAGTTCCCGACGAACGACATTTAGAAAAAGAAAGAAGGGTCTTCTAAAGAAGGTGGGAGAGATAACCACTCTCCGTGACATCAAGGCCGCGGTGATCATCTACAGCCCATTTGACGCCGAGCCGCAGAACTCTCTCGACCTGGACATGATGGATCCGGATGACCTTAAATTTATCATTGAACGCAACCTCGTGGAGCTTGGAATTAAGCAACGGGTTGCCGATGAGCAGATGCAGGAGGAAAACCAGGAGAACCAACTCAACCAGGTGGAAGCCGAATCGACTTCGGTGGAGCTCGCCCTAACGACGAGGAGTGCATTTGGGAAGGAACCATCGAGGCGTGAAGCAGCAACAACAACACCAAGTTGCGATGGAGGCGCAAACTATGGAGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

145

Amino Acids

16.39

Weight (kDa)

5.96

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	1.9e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	3 cut(s)	129, 131, 164
AclWI	GGATC	2 cut(s)	188, 201
AcsI	RAATTY	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	3 cut(s)	180, 285, 303
AluBI	AGCT	2 cut(s)	238, 334
AluI	AGCT	2 cut(s)	238, 334
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	188, 201
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	28, 145
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	3 cut(s)	184, 379, 404
BciT130I	CCWGG	3 cut(s)	182, 287, 305
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	3 cut(s)	129, 164, 387
BlsI	GCNGC	3 cut(s)	130, 165, 388
Bme1390I	CCNGG	3 cut(s)	182, 287, 305
BmiI	GGNNCC	2 cut(s)	195, 369
BmrFI	CCNGG	3 cut(s)	182, 287, 305
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	196
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	182, 287, 305
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	135, 193
BspACI	CCGC	3 cut(s)	129, 131, 164
BspANI	GGCC	1 cut(s)	128
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	195, 369
BspPI	GGATC	2 cut(s)	188, 201
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	135, 193
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	3 cut(s)	182, 287, 305
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	138, 196
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	135, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	3 cut(s)	182, 287, 305
BstSCI	CCNGG	3 cut(s)	180, 285, 303
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	336
CfoI	GCGC	1 cut(s)	419
Cfr42I	CCGCGG	1 cut(s)	132
CseI	GACGC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	303
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	7 cut(s)	5, 128, 147, 163, 238, 314, 334
CviKI_1	RGCY	7 cut(s)	5, 128, 147, 163, 238, 314, 334
DpnI	GATC	2 cut(s)	137, 195
DpnII	GATC	2 cut(s)	135, 193
Ecl136II	GAGCTC	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	3 cut(s)	180, 285, 303
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	30, 188, 426
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	129, 164, 387
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	129, 164, 387
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	3 cut(s)	129, 164, 387
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	28, 145
Hpy188III	TCNNGA	3 cut(s)	48, 176, 197
Hpy99I	CGWCG	2 cut(s)	54, 349
HpyAV	CCTTC	4 cut(s)	7, 70, 85, 358
HpyCH4V	TGCA	3 cut(s)	25, 274, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	417
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	135
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	135, 193
LmnI	GCTCC	3 cut(s)	235, 331, 428
LpnPI	CCDG	8 cut(s)	167, 194, 210, 260, 272, 290, 299, 317
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	1 cut(s)	261
MabI	ACCWGGT	1 cut(s)	303
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	137, 195
MboI	GATC	2 cut(s)	135, 193
MboII	GAAGA	1 cut(s)	74
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	209, 243
MnlI	CCTC	5 cut(s)	239, 271, 342, 369, 407
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	2 cut(s)	207, 246
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	3 cut(s)	182, 287, 305
MvaI	CCWGG	3 cut(s)	182, 287, 305
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	414
NdeII	GATC	2 cut(s)	135, 193
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	195, 369
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	130, 165, 388
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	3 cut(s)	180, 285, 303
PspGI	CCWGG	3 cut(s)	180, 285, 303
PspN4I	GGNNCC	2 cut(s)	195, 369
PsuI	RGATCY	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	336
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	207, 246
SatI	GCNGC	3 cut(s)	129, 164, 387
Sau3AI	GATC	2 cut(s)	135, 193
ScrFI	CCNGG	3 cut(s)	182, 287, 305
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	8 cut(s)	18, 96, 183, 207, 231, 240, 309, 336
SexAI	ACCWGGT	1 cut(s)	303
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	142
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	209, 243
SsiI	CCGC	3 cut(s)	129, 131, 164
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	180, 285, 303
TaqI	TCGA	3 cut(s)	177, 320, 374
TasI	AATT	2 cut(s)	209, 243
TauI	GCSGC	2 cut(s)	131, 166
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	207, 246
Tru9I	TTAA	2 cut(s)	207, 246
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	104
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.