Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

47618256 .. 47619068

Gene Structure 813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTAGAAGAAAGTTGAGACTGCAATACATCGCCAATGCGAGTTCCAGAAGAAACACATTTAAGAAAAGAAATAAGGGCCTTCTGAAGAAGGTATACGAGATCACCGCTCTCTGTGACATCAAGGCTGCGGCGGTCATCTATAGTCCCTTTGAAGTTGAGCCGAAGGTCTTCCCAAGTCATTCAGAAGTCCACCAAATGCTAACAAGGTTCCGAGATATGCCGGAGATGGACAAGATAAGAAATAAGGTCAACCAGGAGACCTTCTTACGACAACAAATAGACAAAATCCAAGTGAAAATCATAAAGTTGAAAAGAGACAACCATGAGAAGCAGATCACTCAAGTCATGTTCGACTGCTTGAAGGGGAAAACCCTTTCTGATCTTGAATTAAAGGATCTGAGTGACCTCACTTTTATAATCGAACAGAACCTCAAGGAGTTGGACATCAATCAGCAGGAGGAGAACCAGCTCAACCAGGTGCAAGCTGCACCAACTGCGGTAGATCTCAACCTGACAACGATGTGTGCATTTGGTGAGGGATCCAGTAGAGGCGTGGAGCAGCAGCAACACCATATCCTTGTGAAGGCGCAGAGTATGGACCATATGCATTACAAGATGATGCAGATTGCAGAGCAAAGGCAGCAACAGATGCTTCAACAGCAACCCTGGTTCATGGACATCATGAACCCACCGTTGCCACATAAGATGGATTTCTTGCACCCGCTACCACCACTTCCGCCAGGAGCGTTCGGAGACTACAACAGCGGCAATGACACATGGCCAAATGATTCGTCCCTTCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

270

Amino Acids

31.49

Weight (kDa)

8.85

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	2.1e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	7 cut(s)	108, 131, 134, 500, 725, 740, 768
AclWI	GGATC	3 cut(s)	405, 537, 550
AcoI	YGGCCR	1 cut(s)	782
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	5 cut(s)	155, 313, 364, 389, 659
AjnI	CCWGG	4 cut(s)	255, 477, 668, 742
AluBI	AGCT	2 cut(s)	472, 488
AluI	AGCT	2 cut(s)	472, 488
Alw26I	GTCTC	4 cut(s)	13, 254, 312, 750
AlwI	GGATC	3 cut(s)	405, 537, 550
AoxI	GGCC	2 cut(s)	79, 782
ApeKI	GCWGC	5 cut(s)	128, 488, 562, 565, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	2 cut(s)	79, 601
AsuHPI	GGTGA	2 cut(s)	97, 548
AvaII	GGWCC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	784
BamHI	GGATCC	1 cut(s)	542
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	5 cut(s)	115, 475, 574, 577, 655
BccI	CCATC	2 cut(s)	223, 703
BciT130I	CCWGG	4 cut(s)	257, 479, 670, 744
BcoDI	GTCTC	4 cut(s)	13, 254, 312, 750
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	142
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	7 cut(s)	129, 132, 489, 563, 566, 644, 769
BlsI	GCNGC	7 cut(s)	130, 133, 490, 564, 567, 645, 770
Bme1390I	CCNGG	4 cut(s)	257, 479, 670, 744
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	79, 601
BmiI	GGNNCC	2 cut(s)	212, 544
BmrFI	CCNGG	4 cut(s)	257, 479, 670, 744
BmsI	GCATC	2 cut(s)	612, 642
BpiI	GAAGAC	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	327, 419
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	778
BseBI	CCWGG	4 cut(s)	257, 479, 670, 744
BseDI	CCNNGG	1 cut(s)	668
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	5 cut(s)	115, 475, 574, 577, 655
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	2 cut(s)	81, 784
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	132, 781
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	4 cut(s)	13, 254, 312, 750
BsmFI	GGGAC	2 cut(s)	132, 781
BsnI	GGCC	2 cut(s)	81, 784
Bso31I	GGTCTC	1 cut(s)	254
Bsp143I	GATC	6 cut(s)	102, 336, 382, 397, 505, 542
BspACI	CCGC	7 cut(s)	108, 131, 134, 500, 725, 740, 768
BspANI	GGCC	2 cut(s)	81, 784
BspCNI	CTCAG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	2 cut(s)	212, 544
BspPI	GGATC	3 cut(s)	405, 537, 550
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	778
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	6 cut(s)	102, 336, 382, 397, 505, 542
BssNAI	GTATAC	1 cut(s)	97
Bst1107I	GTATAC	1 cut(s)	97
Bst2UI	CCWGG	4 cut(s)	257, 479, 670, 744
Bst4CI	ACNGT	1 cut(s)	696
BstAPI	GCANNNNNTGC	2 cut(s)	497, 652
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	401
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	6 cut(s)	105, 339, 385, 400, 508, 545
BstMAI	GTCTC	4 cut(s)	13, 254, 312, 750
BstMBI	GATC	6 cut(s)	102, 336, 382, 397, 505, 542
BstMWI	GCNNNNNNNGC	4 cut(s)	497, 643, 652, 661
BstNI	CCWGG	4 cut(s)	257, 479, 670, 744
BstSCI	CCNGG	4 cut(s)	255, 477, 668, 742
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	5 cut(s)	115, 475, 574, 577, 655
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	3 cut(s)	397, 505, 542
BstYI	RGATCY	3 cut(s)	397, 505, 542
BstZ17I	GTATAC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	81, 784
BtgZI	GCGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	486
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	79, 601
CsiI	ACCWGGT	1 cut(s)	477
CviAII	CATG	5 cut(s)	326, 349, 676, 685, 780
CviJI	RGCY	7 cut(s)	5, 81, 128, 163, 472, 488, 784
CviKI_1	RGCY	7 cut(s)	5, 81, 128, 163, 472, 488, 784
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	6 cut(s)	104, 338, 384, 399, 507, 544
DpnII	GATC	6 cut(s)	102, 336, 382, 397, 505, 542
EaeI	YGGCCR	1 cut(s)	782
EciI	GGCGGA	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	4 cut(s)	255, 477, 668, 742
EcoT22I	ATGCAT	1 cut(s)	612
FaeI	CATG	5 cut(s)	329, 352, 679, 688, 783
FaqI	GGGAC	2 cut(s)	132, 781
FatI	CATG	5 cut(s)	325, 348, 675, 684, 779
FauI	CCCGC	1 cut(s)	732
FauNDI	CATATG	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	7 cut(s)	129, 132, 489, 563, 566, 644, 769
Fsp4HI	GCNGC	7 cut(s)	129, 132, 489, 563, 566, 644, 769
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	7 cut(s)	129, 132, 489, 563, 566, 644, 769
HaeIII	GGCC	2 cut(s)	81, 784
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	5 cut(s)	329, 352, 679, 688, 783
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	791
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	97, 548
Hpy166II	GTNNAC	3 cut(s)	97, 193, 253
Hpy188I	TCNGA	6 cut(s)	87, 187, 215, 382, 402, 755
Hpy188III	TCNNGA	3 cut(s)	48, 386, 685
Hpy8I	GTNNAC	3 cut(s)	97, 193, 253
HpyAV	CCTTC	7 cut(s)	85, 92, 160, 274, 358, 580, 809
HpyCH4III	ACNGT	1 cut(s)	696
HpyCH4V	TGCA	8 cut(s)	25, 484, 491, 530, 610, 625, 632, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	497, 643, 652, 661
HpyF3I	CTNAG	1 cut(s)	401
Hsp92II	CATG	5 cut(s)	329, 352, 679, 688, 783
HspAI	GCGC	1 cut(s)	590
Kzo9I	GATC	6 cut(s)	102, 336, 382, 397, 505, 542
LmnI	GCTCC	2 cut(s)	559, 746
Lsp1109I	GCAGC	5 cut(s)	115, 475, 574, 577, 655
LweI	GCATC	2 cut(s)	612, 642
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	116, 404
MalI	GATC	6 cut(s)	104, 338, 384, 399, 507, 544
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	6 cut(s)	102, 336, 382, 397, 505, 542
MboII	GAAGA	4 cut(s)	21, 63, 100, 163
MflI	RGATCY	3 cut(s)	397, 505, 542
MlsI	TGGCCA	1 cut(s)	784
MluCI	AATT	1 cut(s)	389
MluNI	TGGCCA	1 cut(s)	784
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	5 cut(s)	419, 443, 454, 532, 545
Mox20I	TGGCCA	1 cut(s)	784
Mph1103I	ATGCAT	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	784
MseI	TTAA	2 cut(s)	63, 392
Msp20I	TGGCCA	1 cut(s)	784
MspA1I	CMGCKG	1 cut(s)	768
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	4 cut(s)	257, 479, 670, 744
MvaI	CCWGG	4 cut(s)	257, 479, 670, 744
MwoI	GCNNNNNNNGC	4 cut(s)	497, 643, 652, 661
NdeI	CATATG	1 cut(s)	606
NdeII	GATC	6 cut(s)	102, 336, 382, 397, 505, 542
NlaIII	CATG	5 cut(s)	329, 352, 679, 688, 783
NlaIV	GGNNCC	2 cut(s)	212, 544
NmuCI	GTSAC	2 cut(s)	116, 404
NsiI	ATGCAT	1 cut(s)	612
PagI	TCATGA	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	791
PkrI	GCNGC	7 cut(s)	130, 133, 490, 564, 567, 645, 770
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	4 cut(s)	255, 477, 668, 742
PspGI	CCWGG	4 cut(s)	255, 477, 668, 742
PspN4I	GGNNCC	2 cut(s)	212, 544
PspPI	GGNCC	2 cut(s)	79, 601
PsuI	RGATCY	3 cut(s)	397, 505, 542
SaqAI	TTAA	2 cut(s)	63, 392
SatI	GCNGC	7 cut(s)	129, 132, 489, 563, 566, 644, 769
Sau3AI	GATC	6 cut(s)	102, 336, 382, 397, 505, 542
Sau96I	GGNCC	2 cut(s)	79, 601
ScrFI	CCNGG	4 cut(s)	257, 479, 670, 744
SexAI	ACCWGGT	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	612, 642
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	601
SmlI	CTYRAG	2 cut(s)	342, 434
SmoI	CTYRAG	2 cut(s)	342, 434
Sse9I	AATT	1 cut(s)	389
SsiI	CCGC	7 cut(s)	108, 131, 134, 500, 725, 740, 768
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	4 cut(s)	255, 477, 668, 742
TaaI	ACNGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	354, 423
TasI	AATT	1 cut(s)	389
TauI	GCSGC	2 cut(s)	134, 771
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	2 cut(s)	63, 392
Tru9I	TTAA	2 cut(s)	63, 392
TseFI	GTSAC	2 cut(s)	116, 404
TseI	GCWGC	5 cut(s)	128, 488, 562, 565, 643
Tsp45I	GTSAC	2 cut(s)	116, 404
TspDTI	ATGAA	2 cut(s)	664, 701
VpaK11BI	GGWCC	1 cut(s)	601
XagI	CCTNNNNNAGG	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.