Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

27531452 .. 27532201

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G304100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACTAGAAAGAAGGTCAGCCTGACCTACATCACTAATGACTCAGCTAGAAAAGCCACATTCAAGAAAAGGAAGAAGGGTTTGATGAAGAAGGCGAATGAACTTAGCACCCTTTGTGATATTCAAGCATGTGTTATTATTTATAGCCAGTATGAATCTCACCCTGAAGTTTGGCCATCCCCTTTGGGAGTGCAACGCATTGTCTCACAATTCAGGAGCCTGCCAGAGATGGACCAGAGCAAAAAGATGGTCAACCAGGAGACCTTTCTGAGGCAGAGGATTGTGAAGGCCAACGAGCAGCTGAAGAAGCTGAGGAAGGAGAATCGGGAGAAGGAGATGTCGAGGGTCATGTTTCAGAGCCTGACTGGTAAGCCTCTGCAGGGACTGACCATGATTGATCTGAACGACCTCGGGTGGCTCATTGACCAGAACTTGAAGGAGCTGGTTGATAAGATCAAGACCCGGAAGGAGGAGCTGGCTCAGAGAAATCCAGTCCCAGTCCCACCAACTCCAGCAGCTGTGCCTGCAGCTGGAGACCATGCCCTGAACCTGAACATGCACGCAACAATGGAGAGACAAGCTTTCGGGCTTAGCAACATGGGCAACACCATGCAGAGGCCTTCATGGTTCACAGACATGATGAACCCTAATGAGCAAATGGGGTTTGGTGCTGTGGCTGAGGTTCTGCCCTTTGGGGATCAATACCATCATGGTCATGGTCTTTGGTCTAACAATCCTTTTTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

250

Amino Acids

28.5

Weight (kDa)

9.62

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	705
AcoI	YGGCCR	1 cut(s)	173
AcuI	CTGAAG	2 cut(s)	186, 323
AfiI	CCNNNNNNNGG	5 cut(s)	270, 380, 469, 530, 615
AgsI	TTSAA	3 cut(s)	64, 125, 436
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	8 cut(s)	47, 301, 310, 442, 475, 518, 530, 581
AluI	AGCT	8 cut(s)	47, 301, 310, 442, 475, 518, 530, 581
Alw26I	GTCTC	4 cut(s)	208, 254, 528, 568
AlwI	GGATC	1 cut(s)	705
AlwNI	CAGNNNCTG	3 cut(s)	361, 385, 518
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	173, 288, 617
ApeKI	GCWGC	3 cut(s)	298, 515, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	175
BbvCI	CCTCAGC	2 cut(s)	311, 678
BbvI	GCAGC	3 cut(s)	310, 527, 539
BccI	CCATC	4 cut(s)	184, 223, 241, 714
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	4 cut(s)	208, 254, 528, 568
BfaI	CTAG	2 cut(s)	6, 48
BfmI	CTRYAG	2 cut(s)	377, 525
BisI	GCNGC	3 cut(s)	299, 516, 528
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	3 cut(s)	300, 517, 529
Bme1390I	CCNGG	2 cut(s)	257, 463
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	257, 463
BmrI	ACTGGG	1 cut(s)	491
BmuI	ACTGGG	1 cut(s)	491
BpmI	CTGGAG	2 cut(s)	495, 552
Bpu10I	CCTNAGC	2 cut(s)	311, 678
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	463
BsaI	GGTCTC	2 cut(s)	254, 528
BsaJI	CCNNGG	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	5 cut(s)	270, 380, 469, 530, 615
Bse1I	ACTGG	4 cut(s)	148, 370, 491, 497
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	5 cut(s)	270, 380, 469, 530, 615
BseMII	CTCAG	5 cut(s)	57, 260, 302, 494, 669
BseNI	ACTGG	4 cut(s)	148, 370, 491, 497
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	3 cut(s)	310, 527, 539
BshFI	GGCC	3 cut(s)	175, 290, 619
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	463
BslFI	GGGAC	3 cut(s)	396, 479, 485
BslI	CCNNNNNNNGG	5 cut(s)	270, 380, 469, 530, 615
BsmAI	GTCTC	4 cut(s)	208, 254, 528, 568
BsmFI	GGGAC	3 cut(s)	396, 479, 485
BsnI	GGCC	3 cut(s)	175, 290, 619
Bso31I	GGTCTC	2 cut(s)	254, 528
BsoBI	CYCGRG	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	397, 453, 697
Bsp1720I	GCTNAGC	1 cut(s)	590
BspANI	GGCC	3 cut(s)	175, 290, 619
BspCNI	CTCAG	5 cut(s)	56, 261, 303, 493, 670
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	2 cut(s)	381, 529
BspPI	GGATC	1 cut(s)	705
BspTNI	GGTCTC	2 cut(s)	254, 528
BsrI	ACTGG	4 cut(s)	148, 370, 491, 497
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	3 cut(s)	397, 453, 697
Bst2UI	CCWGG	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	221, 477, 525, 561
BstDEI	CTNAG	7 cut(s)	43, 104, 269, 311, 480, 590, 678
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	3 cut(s)	400, 456, 700
BstMAI	GTCTC	4 cut(s)	208, 254, 528, 568
BstMBI	GATC	3 cut(s)	397, 453, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 307, 524, 600
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	2 cut(s)	132, 559
BstSCI	CCNGG	2 cut(s)	255, 461
BstSFI	CTRYAG	2 cut(s)	377, 525
BstV1I	GCAGC	3 cut(s)	310, 527, 539
BsuRI	GGCC	3 cut(s)	175, 290, 619
BtsCI	GGATG	1 cut(s)	176
Cac8I	GCNNGC	4 cut(s)	221, 477, 525, 561
CaiI	CAGNNNCTG	3 cut(s)	361, 385, 518
Cfr13I	GGNCC	1 cut(s)	232
DdeI	CTNAG	7 cut(s)	43, 104, 269, 311, 480, 590, 678
DpnI	GATC	3 cut(s)	399, 455, 699
DpnII	GATC	3 cut(s)	397, 453, 697
EaeI	YGGCCR	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	619
Eco31I	GGTCTC	2 cut(s)	254, 528
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	2 cut(s)	186, 323
Eco88I	CYCGRG	1 cut(s)	410
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	255
FaqI	GGGAC	3 cut(s)	396, 479, 485
Fnu4HI	GCNGC	3 cut(s)	299, 516, 528
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	3 cut(s)	299, 516, 528
FspBI	CTAG	2 cut(s)	6, 48
GluI	GCNGC	3 cut(s)	299, 516, 528
GsuI	CTGGAG	2 cut(s)	495, 552
HaeIII	GGCC	3 cut(s)	175, 290, 619
HapII	CCGG	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	3 cut(s)	41, 155, 322
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	253, 630
Hpy188I	TCNGA	4 cut(s)	270, 357, 402, 483
Hpy188III	TCNNGA	4 cut(s)	64, 214, 326, 457
Hpy8I	GTNNAC	2 cut(s)	253, 630
HpyAV	CCTTC	9 cut(s)	7, 70, 85, 280, 310, 325, 430, 460, 630
HpyCH4V	TGCA	5 cut(s)	193, 379, 527, 559, 613
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 307, 524, 600
HpyF3I	CTNAG	7 cut(s)	43, 104, 269, 311, 480, 590, 678
Kzo9I	GATC	3 cut(s)	397, 453, 697
LmnI	GCTCC	3 cut(s)	216, 439, 472
Lsp1109I	GCAGC	3 cut(s)	310, 527, 539
MaeI	CTAG	2 cut(s)	6, 48
MalI	GATC	3 cut(s)	399, 455, 699
MboI	GATC	3 cut(s)	397, 453, 697
MboII	GAAGA	3 cut(s)	85, 100, 316
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	9 cut(s)	264, 270, 306, 336, 384, 419, 463, 609, 673
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MslI	CAYNNNNRTG	2 cut(s)	635, 714
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	3 cut(s)	301, 518, 530
MspI	CCGG	1 cut(s)	463
MspR9I	CCNGG	2 cut(s)	257, 463
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	4 cut(s)	53, 307, 524, 600
NciI	CCSGG	1 cut(s)	463
NdeII	GATC	3 cut(s)	397, 453, 697
NlaIV	GGNNCC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	132, 559
PceI	AGGCCT	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	155, 322
PkrI	GCNGC	3 cut(s)	300, 517, 529
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	232
PstI	CTGCAG	2 cut(s)	381, 529
PstNI	CAGNNNCTG	3 cut(s)	361, 385, 518
PvuII	CAGCTG	3 cut(s)	301, 518, 530
RseI	CAYNNNNRTG	2 cut(s)	635, 714
SatI	GCNGC	3 cut(s)	299, 516, 528
Sau3AI	GATC	3 cut(s)	397, 453, 697
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	257, 463
SfcI	CTRYAG	2 cut(s)	377, 525
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	635, 714
Sse9I	AATT	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	619
SspMI	CTAG	2 cut(s)	6, 48
StuI	AGGCCT	1 cut(s)	619
StyD4I	CCNGG	2 cut(s)	255, 461
TaqI	TCGA	1 cut(s)	341
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	155, 322
TseI	GCWGC	3 cut(s)	298, 515, 527
TspDTI	ATGAA	5 cut(s)	101, 114, 168, 612, 656
VpaK11BI	GGWCC	1 cut(s)	232
XagI	CCTNNNNNAGG	1 cut(s)	268
XceI	RCATGY	2 cut(s)	132, 559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XspI	CTAG	2 cut(s)	6, 48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.