Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002349.1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

25697 .. 26560

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002349.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggctagaaggaaggtgagactgcactacattgccaatgagagttccagacgaacaacatttagaaaaagaaagaagggtcttctgaagaaggtgggagagataaccactctatgtgacatcaaggccgcggtgatcatctacaacccctttgatggcgagccggaggtgttcccaagtcattcggaagtccatgaactgctaacgaagttccgagatatgccgcaaatggacaagacaagaaagatggtcaaccaggagacattcttacgacaacgaatcaacaaagtcagggagcagatcagaaagatgaaacgagacaaccgagaaaaggagatcactcaagtcatgttcggttgtttgaaggggagaacactcttcaacctggaaatgaaggatctgcaagacctcaattttatcattgaacacaacctcaaggagcttgaaatcaaacagcgggctgccaatgagcagaatgctaatgggcagaagcaggaggaaaaccaggagaaccagtttaatcgggtgcaagctgaatcaattgaggtggagctcggcttgatgacgaggaatgcatttgtggagggaaccagcagaggcgtgcagcaacaacaccaccaagccgcgatggaggctcatagcatggagcagtggcaataccaaatgatgcaggttgcagctcagaggcagcaacatcagcagctattccagcagcaaccctggttcgtggacatcatgaactcaccaccgccccaaacgagggacttcttgcacccactaccaccgcttcagccaggagggttcggagactacaacagtgacaatgctacatggccaaacaactcttcattttgtttctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

287

Amino Acids

33.82

Weight (kDa)

9.2

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	661
AccII	CGCG	2 cut(s)	131, 626
AciI	CCGC	7 cut(s)	129, 131, 224, 457, 624, 749, 785
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	833
AcuI	CTGAAG	2 cut(s)	107, 773
AfiI	CCNNNNNNNGG	4 cut(s)	155, 331, 759, 760
AgsI	TTSAA	4 cut(s)	364, 382, 425, 446
AjnI	CCWGG	5 cut(s)	255, 384, 504, 719, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	829, 861
AluBI	AGCT	5 cut(s)	442, 533, 553, 680, 703
AluI	AGCT	5 cut(s)	442, 533, 553, 680, 703
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	4 cut(s)	13, 254, 312, 801
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	2 cut(s)	126, 833
ApeKI	GCWGC	6 cut(s)	461, 604, 677, 688, 700, 712
AsuHPI	GGTGA	3 cut(s)	28, 145, 735
BalI	TGGCCA	1 cut(s)	835
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	6 cut(s)	448, 616, 689, 700, 712, 724
BccI	CCATC	3 cut(s)	149, 241, 622
BciT130I	CCWGG	5 cut(s)	257, 386, 506, 721, 795
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	4 cut(s)	13, 254, 312, 801
BfaI	CTAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	9 cut(s)	129, 224, 462, 605, 624, 678, 689, 701, 713
BlsI	GCNGC	9 cut(s)	130, 225, 463, 606, 625, 679, 690, 702, 714
Bme1390I	CCNGG	5 cut(s)	257, 386, 506, 721, 795
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	5 cut(s)	257, 386, 506, 721, 795
BmsI	GCATC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	74
BpuEI	CTTGAG	2 cut(s)	327, 419
BsaJI	CCNNGG	2 cut(s)	129, 719
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 331, 759, 760
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	5 cut(s)	257, 386, 506, 721, 795
BseDI	CCNNGG	2 cut(s)	129, 719
BseLI	CCNNNNNNNGG	4 cut(s)	155, 331, 759, 760
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	695
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	6 cut(s)	448, 616, 689, 700, 712, 724
BsgI	GTGCAG	2 cut(s)	8, 623
Bsh1236I	CGCG	2 cut(s)	131, 626
BshFI	GGCC	2 cut(s)	128, 835
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	4 cut(s)	155, 331, 759, 760
BsmAI	GTCTC	4 cut(s)	13, 254, 312, 801
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	2 cut(s)	481, 577
BsnI	GGCC	2 cut(s)	128, 835
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	135, 300, 336, 397
BspACI	CCGC	7 cut(s)	129, 131, 224, 457, 624, 749, 785
BspANI	GGCC	2 cut(s)	128, 835
BspCNI	CTCAG	1 cut(s)	694
BspFNI	CGCG	2 cut(s)	131, 626
BspHI	TCATGA	1 cut(s)	735
BspLI	GGNNCC	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	129, 719
BssMI	GATC	4 cut(s)	135, 300, 336, 397
Bst2UI	CCWGG	5 cut(s)	257, 386, 506, 721, 795
Bst4CI	ACNGT	1 cut(s)	818
Bst6I	CTCTTC	2 cut(s)	383, 850
BstC8I	GCNNGC	4 cut(s)	161, 459, 531, 602
BstDEI	CTNAG	1 cut(s)	681
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	2 cut(s)	131, 626
BstKTI	GATC	4 cut(s)	138, 303, 339, 400
BstMAI	GTCTC	4 cut(s)	13, 254, 312, 801
BstMBI	GATC	4 cut(s)	135, 300, 336, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	632, 697, 709
BstNI	CCWGG	5 cut(s)	257, 386, 506, 721, 795
BstSCI	CCNGG	5 cut(s)	255, 384, 504, 719, 793
BstUI	CGCG	2 cut(s)	131, 626
BstV1I	GCAGC	6 cut(s)	448, 616, 689, 700, 712, 724
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	128, 835
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	641
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	2 cut(s)	656, 823
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	4 cut(s)	161, 459, 531, 602
CciI	TCATGA	1 cut(s)	735
Cfr42I	CCGCGG	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	5 cut(s)	194, 349, 643, 736, 831
DdeI	CTNAG	1 cut(s)	681
DpnI	GATC	4 cut(s)	137, 302, 338, 399
DpnII	GATC	4 cut(s)	135, 300, 336, 397
EaeI	YGGCCR	1 cut(s)	833
Eam1104I	CTCTTC	2 cut(s)	383, 850
EarI	CTCTTC	2 cut(s)	383, 850
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	107, 773
EcoICRI	GAGCTC	1 cut(s)	553
EcoRII	CCWGG	5 cut(s)	255, 384, 504, 719, 793
EcoT22I	ATGCAT	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	555
FaeI	CATG	5 cut(s)	197, 352, 646, 739, 834
FaiI	YATR	8 cut(s)	115, 195, 221, 350, 639, 644, 737, 832
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	5 cut(s)	193, 348, 642, 735, 830
FauI	CCCGC	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	9 cut(s)	129, 224, 462, 605, 624, 678, 689, 701, 713
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	9 cut(s)	129, 224, 462, 605, 624, 678, 689, 701, 713
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	9 cut(s)	129, 224, 462, 605, 624, 678, 689, 701, 713
HaeIII	GGCC	2 cut(s)	128, 835
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	5 cut(s)	197, 352, 646, 739, 834
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	279, 536
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	3 cut(s)	28, 145, 735
Hpy166II	GTNNAC	2 cut(s)	253, 730
Hpy188I	TCNGA	6 cut(s)	87, 187, 215, 305, 684, 806
Hpy188III	TCNNGA	3 cut(s)	48, 736, 861
Hpy8I	GTNNAC	2 cut(s)	253, 730
HpyAV	CCTTC	6 cut(s)	3, 7, 70, 85, 358, 388
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4V	TGCA	8 cut(s)	25, 403, 529, 575, 604, 670, 677, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	632, 697, 709
HpyF3I	CTNAG	1 cut(s)	681
Hsp92II	CATG	5 cut(s)	197, 352, 646, 739, 834
Ksp22I	TGATCA	1 cut(s)	135
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	135, 300, 336, 397
LmnI	GCTCC	4 cut(s)	295, 439, 550, 646
Lsp1109I	GCAGC	6 cut(s)	448, 616, 689, 700, 712, 724
LweI	GCATC	1 cut(s)	657
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	116, 818
MalI	GATC	4 cut(s)	137, 302, 338, 399
MboI	GATC	4 cut(s)	135, 300, 336, 397
MboII	GAAGA	4 cut(s)	74, 100, 370, 837
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	835
MluCI	AATT	2 cut(s)	412, 540
MluNI	TGGCCA	1 cut(s)	835
Mox20I	TGGCCA	1 cut(s)	835
Mph1103I	ATGCAT	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	835
MseI	TTAA	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	835
MspA1I	CMGCKG	2 cut(s)	131, 457
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	5 cut(s)	257, 386, 506, 721, 795
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	2 cut(s)	481, 577
MvaI	CCWGG	5 cut(s)	257, 386, 506, 721, 795
MvnI	CGCG	2 cut(s)	131, 626
MwoI	GCNNNNNNNGC	3 cut(s)	632, 697, 709
NdeII	GATC	4 cut(s)	135, 300, 336, 397
NlaIII	CATG	5 cut(s)	197, 352, 646, 739, 834
NlaIV	GGNNCC	1 cut(s)	589
NmeAIII	GCCGAG	1 cut(s)	534
NmuCI	GTSAC	2 cut(s)	116, 818
NsiI	ATGCAT	1 cut(s)	577
PagI	TCATGA	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PctI	GAATGC	2 cut(s)	481, 577
PfeI	GAWTC	2 cut(s)	279, 536
PkrI	GCNGC	9 cut(s)	130, 225, 463, 606, 625, 679, 690, 702, 714
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	5 cut(s)	255, 384, 504, 719, 793
PspGI	CCWGG	5 cut(s)	255, 384, 504, 719, 793
PspN4I	GGNNCC	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	555
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	9 cut(s)	129, 224, 462, 605, 624, 678, 689, 701, 713
Sau3AI	GATC	4 cut(s)	135, 300, 336, 397
ScrFI	CCNGG	5 cut(s)	257, 386, 506, 721, 795
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	657
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	342, 434
SmoI	CTYRAG	2 cut(s)	342, 434
Sse9I	AATT	2 cut(s)	412, 540
SsiI	CCGC	7 cut(s)	129, 131, 224, 457, 624, 749, 785
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	5 cut(s)	255, 384, 504, 719, 793
TaaI	ACNGT	1 cut(s)	818
TasI	AATT	2 cut(s)	412, 540
TauI	GCSGC	3 cut(s)	131, 226, 626
TfiI	GAWTC	2 cut(s)	279, 536
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	656, 823
TseFI	GTSAC	2 cut(s)	116, 818
TseI	GCWGC	6 cut(s)	461, 604, 677, 688, 700, 712
Tsp45I	GTSAC	2 cut(s)	116, 818
TspDTI	ATGAA	5 cut(s)	210, 326, 407, 752, 837
TspRI	CASTG	2 cut(s)	656, 823
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.