Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

25232317 .. 25233060

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG156100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTAGAAGGAGGGTGAGATTGCACTACATCGCTAATGGGAGTTCCCGAAACACCACATTCAGGAAAAGAAAGAAGAGCCTTCTAAAGAAGGTAGACGAGATAACCACTCTCTGTGACATCAAGGCCGCGGCAATCATCTACAGCCCCTTTGACTCCGAGCCGGAGGTCTTCCCAAGTCATCCAGAAGTCCGCCAACTGCTGACGAGGTTCCGAGATATGCCGGAAATGGACAAGACAAGAAAGATGGTCAACCAGGAGACCTTCTTAAGACAGCGTATAGACAAAGCTCGGGAGCAGACCAAAAAGGTAAAAAGAGAAAATCGGGATAAGGAGATCTCTCATATCATGTTCAGCTGTTTGAAGGGTAAAACCATCTTTGACCTAGAAATGAGGGATCTGCATGACCTCTACTTTATCATCGAACGCAACCTCATGGAGCTTGAAATAAAGAAGCAGGACAAGCAGGAGAAAAACCAAGAGAACAAGCTCAACCTAGTGGAAGCTGCACCAGCTGCGGCGGAGCTTAGCCTGATGATGAGGAGTGTATTTGGAGAGGGAACTAGCAGAGGCATGGTGTATGAAGCAGATGCAGTACCAAATGATGCAAATGTAGTACCAAATGATGCAGGTTACGACTTAGATATTGTAGCAGCAACCCTGGTTCGTGGACATCCAAAACCTACAATCGCCGCAGATGATGGACTTCTTGCACCCACTACCACTGCTTCCACCAGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

247

Amino Acids

28.28

Weight (kDa)

9.22

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	4.2e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	131
AciI	CCGC	6 cut(s)	129, 131, 193, 518, 521, 693
AclWI	GGATC	1 cut(s)	405
AfaI	GTAC	2 cut(s)	597, 618
AfiI	CCNNNNNNNGG	1 cut(s)	63
AflII	CTTAAG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	364, 446
AjnI	CCWGG	3 cut(s)	255, 660, 734
AluBI	AGCT	8 cut(s)	290, 357, 442, 490, 506, 515, 526, 741
AluI	AGCT	8 cut(s)	290, 357, 442, 490, 506, 515, 526, 741
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	506, 515, 653
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	493, 502, 665
BccI	CCATC	3 cut(s)	241, 383, 695
BciT130I	CCWGG	3 cut(s)	257, 662, 736
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	5 cut(s)	6, 386, 497, 564, 742
BfmI	CTRYAG	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	620
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	7 cut(s)	129, 132, 507, 516, 519, 654, 693
BlpI	GCTNAGC	1 cut(s)	527
BlsI	GCNGC	7 cut(s)	130, 133, 508, 517, 520, 655, 694
Bme1390I	CCNGG	3 cut(s)	257, 662, 736
BmeT110I	CYCGRG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	3 cut(s)	257, 662, 736
BmsI	GCATC	3 cut(s)	580, 595, 616
BpiI	GAAGAC	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	129, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseBI	CCWGG	3 cut(s)	257, 662, 736
BseDI	CCNNGG	2 cut(s)	129, 660
BseGI	GGATG	2 cut(s)	181, 673
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	493, 502, 665
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	164, 224
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	336, 397
Bsp1720I	GCTNAGC	1 cut(s)	527
BspACI	CCGC	6 cut(s)	129, 131, 193, 518, 521, 693
BspANI	GGCC	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	1 cut(s)	405
BspQI	GCTCTTC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	129, 660
BssMI	GATC	2 cut(s)	336, 397
Bst2UI	CCWGG	3 cut(s)	257, 662, 736
Bst6I	CTCTTC	1 cut(s)	71
BstAFI	CTTAAG	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	527, 640
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	181, 673
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	339, 400
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	336, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	463, 512, 515
BstNI	CCWGG	3 cut(s)	257, 662, 736
BstSCI	CCNGG	3 cut(s)	255, 660, 734
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	493, 502, 665
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	336, 397
BstYI	RGATCY	2 cut(s)	336, 397
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	181, 673
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	723
BveI	ACCTGC	1 cut(s)	620
Cfr42I	CCGCGG	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	596, 617
CviAII	CATG	4 cut(s)	349, 404, 436, 574
CviQI	GTAC	2 cut(s)	596, 617
DdeI	CTNAG	2 cut(s)	527, 640
DpnI	GATC	2 cut(s)	338, 399
DpnII	GATC	2 cut(s)	336, 397
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	2 cut(s)	182, 536
Eco31I	GGTCTC	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	255, 660, 734
FaeI	CATG	4 cut(s)	352, 407, 439, 577
FaiI	YATR	8 cut(s)	221, 281, 345, 350, 405, 437, 575, 582
FatI	CATG	4 cut(s)	348, 403, 435, 573
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	7 cut(s)	129, 132, 507, 516, 519, 654, 693
FokI	GGATG	2 cut(s)	168, 660
Fsp4HI	GCNGC	7 cut(s)	129, 132, 507, 516, 519, 654, 693
FspBI	CTAG	5 cut(s)	6, 386, 497, 564, 742
GluI	GCNGC	7 cut(s)	129, 132, 507, 516, 519, 654, 693
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	2 cut(s)	164, 224
Hin1II	CATG	4 cut(s)	352, 407, 439, 577
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	2 cut(s)	164, 224
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	97, 253, 671
Hpy188I	TCNGA	2 cut(s)	160, 215
Hpy188III	TCNNGA	5 cut(s)	48, 64, 185, 293, 326
Hpy8I	GTNNAC	3 cut(s)	97, 253, 671
HpyAV	CCTTC	5 cut(s)	3, 85, 92, 274, 358
HpyCH4V	TGCA	7 cut(s)	25, 403, 509, 593, 608, 629, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	463, 512, 515
HpyF3I	CTNAG	2 cut(s)	527, 640
Hsp92II	CATG	4 cut(s)	352, 407, 439, 577
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	336, 397
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	4 cut(s)	295, 439, 523, 738
Lsp1109I	GCAGC	3 cut(s)	493, 502, 665
LweI	GCATC	3 cut(s)	580, 595, 616
MaeI	CTAG	5 cut(s)	6, 386, 497, 564, 742
MaeIII	GTNAC	2 cut(s)	116, 632
MalI	GATC	2 cut(s)	338, 399
MboI	GATC	2 cut(s)	336, 397
MboII	GAAGA	2 cut(s)	88, 163
MflI	RGATCY	2 cut(s)	336, 397
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	6, 160, 201, 387, 419, 443, 534, 550, 563
MseI	TTAA	1 cut(s)	269
MspA1I	CMGCKG	3 cut(s)	131, 357, 515
MspCI	CTTAAG	1 cut(s)	268
MspI	CCGG	2 cut(s)	164, 224
MspR9I	CCNGG	3 cut(s)	257, 662, 736
MvaI	CCWGG	3 cut(s)	257, 662, 736
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	463, 512, 515
NdeII	GATC	2 cut(s)	336, 397
NlaIII	CATG	4 cut(s)	352, 407, 439, 577
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	71
PkrI	GCNGC	7 cut(s)	130, 133, 508, 517, 520, 655, 694
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	255, 660, 734
PspGI	CCWGG	3 cut(s)	255, 660, 734
PspN4I	GGNNCC	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	336, 397
PvuII	CAGCTG	2 cut(s)	357, 515
RsaI	GTAC	2 cut(s)	597, 618
RsaNI	GTAC	2 cut(s)	596, 617
SacII	CCGCGG	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	7 cut(s)	129, 132, 507, 516, 519, 654, 693
Sau3AI	GATC	2 cut(s)	336, 397
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	257, 662, 736
SfaNI	GCATC	3 cut(s)	580, 595, 616
SfcI	CTRYAG	1 cut(s)	142
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SsiI	CCGC	6 cut(s)	129, 131, 193, 518, 521, 693
SspMI	CTAG	5 cut(s)	6, 386, 497, 564, 742
StyD4I	CCNGG	3 cut(s)	255, 660, 734
TaqI	TCGA	1 cut(s)	423
TauI	GCSGC	4 cut(s)	131, 134, 521, 695
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	3 cut(s)	506, 515, 653
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	597
TspRI	CASTG	1 cut(s)	730
Vha464I	CTTAAG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	5 cut(s)	6, 386, 497, 564, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.