Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

58216900 .. 58217742

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTAGAAGAAAGGTGAGACTGCACTACATAGCCAATGTGAGTTCTCGAAAAAACACATTTAGGAAAAGGAAGAAGGGCCTTATGAAGAAGATGAAAGAGATCACCACTCTTTGTGACATTAAGGCTGCGGCGATCATCTACAGTCCCTTTGAAACCGAGCCTGAGGTCTTCCCAAATCATCCGGAAGCCCACGAAATGCTGACGAGGTTTCGAAATATGCCGGAAATGGACAAGACAAGAAGGATGATGGACCAGGAGATCTTCTTACGACAACGAATAGACAAAACCCGAGAGCAGATAAGAAAGCAGAAAAGAGACAATCGGGAGAAGCAGATTACTCAAGTTATGTTCGACTGCTTGAAGGGGAAAACCATCTCTAACCTTGAAAAGAAGGATCTGAATGACCTCACTTTTATAATCGAACAGAACCTTAGGGAGTTAGATATCAAAGAGAAGGCTATGGAGGAGCACAAGCAGGAGGAGAACCAGCAGAACCAGCTTAACCAGATGCCAGGTGTGCCAGCTGCTGTGGAGCTTGACTTGACGAGGAATGCATTTGGAGAGGGAACAAGCAGAGGTGTGGGGCAGCAGCAGCACCCTGCCACGATGGATGCACAGAGTATGGAGCAGATGCATTACCAAATGATGCAGGTTGCGGCGCAAAGGCAGCCTCAACAGATGCTCCAACAGCAACCCTGGTTCATGGACATCATGAATCCACCATCGCCGCAGACGATGGACTTCTTGCAGCCGCTACCACCGCTTCCACCAGGAGTGTTCGGAGACAACAGCAGCAGAAATGCTACATGGCCAAATAATTCGTCATTTCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

280

Amino Acids

32.93

Weight (kDa)

9.47

Isoelectric Point (pI)

67.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	1e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	643
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	5 cut(s)	131, 659, 731, 755, 764
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	812
AgsI	TTSAA	3 cut(s)	155, 364, 389
AjnI	CCWGG	4 cut(s)	255, 514, 698, 772
AluBI	AGCT	3 cut(s)	502, 527, 538
AluI	AGCT	3 cut(s)	502, 527, 538
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	3 cut(s)	13, 312, 780
AlwI	GGATC	1 cut(s)	405
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	79, 812
ApeKI	GCWGC	8 cut(s)	128, 527, 589, 592, 595, 670, 751, 795
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	2 cut(s)	79, 253
AsuHPI	GGTGA	2 cut(s)	28, 97
AsuII	TTCGAA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	2 cut(s)	165, 434
BalI	TGGCCA	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	8 cut(s)	115, 514, 601, 604, 607, 682, 763, 807
BccI	CCATC	5 cut(s)	244, 383, 604, 733, 733
BciT130I	CCWGG	4 cut(s)	257, 516, 700, 774
BcoDI	GTCTC	3 cut(s)	13, 312, 780
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	643
BglII	AGATCT	1 cut(s)	261
Bme1390I	CCNGG	4 cut(s)	257, 516, 700, 774
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	2 cut(s)	79, 253
BmrFI	CCNGG	4 cut(s)	257, 516, 700, 774
BmsI	GCATC	5 cut(s)	501, 604, 624, 639, 672
BpiI	GAAGAC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	698
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bse21I	CCTNAGG	2 cut(s)	165, 434
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	4 cut(s)	257, 516, 700, 774
BseDI	CCNNGG	1 cut(s)	698
BseGI	GGATG	3 cut(s)	181, 252, 619
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	482, 497
BseXI	GCAGC	8 cut(s)	115, 514, 601, 604, 607, 682, 763, 807
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	81, 814
BsiHKAI	GWGCWC	1 cut(s)	474
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	185, 224
BslFI	GGGAC	1 cut(s)	132
BsmAI	GTCTC	3 cut(s)	13, 312, 780
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	81, 814
BsoBI	CYCGRG	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	102, 135, 261, 397
BspACI	CCGC	5 cut(s)	131, 659, 731, 755, 764
BspANI	GGCC	2 cut(s)	81, 814
BspCNI	CTCAG	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	714
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	698
BssMI	GATC	4 cut(s)	102, 135, 261, 397
Bst2UI	CCWGG	4 cut(s)	257, 516, 700, 774
Bst4CI	ACNGT	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	165, 434
BstF5I	GGATG	3 cut(s)	181, 252, 619
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	4 cut(s)	105, 138, 264, 400
BstMAI	GTCTC	3 cut(s)	13, 312, 780
BstMBI	GATC	4 cut(s)	102, 135, 261, 397
BstMWI	GCNNNNNNNGC	6 cut(s)	499, 520, 595, 670, 691, 763
BstNI	CCWGG	4 cut(s)	257, 516, 700, 774
BstSCI	CCNGG	4 cut(s)	255, 514, 698, 772
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	8 cut(s)	115, 514, 601, 604, 607, 682, 763, 807
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	261, 397
BstYI	RGATCY	2 cut(s)	261, 397
Bsu36I	CCTNAGG	2 cut(s)	165, 434
BsuRI	GGCC	2 cut(s)	81, 814
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	3 cut(s)	181, 252, 619
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	525
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	714
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	2 cut(s)	79, 253
CviAII	CATG	3 cut(s)	706, 715, 810
DdeI	CTNAG	2 cut(s)	165, 434
DpnI	GATC	4 cut(s)	104, 137, 263, 399
DpnII	GATC	4 cut(s)	102, 135, 261, 397
EaeI	YGGCCR	1 cut(s)	812
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	253
Eco81I	CCTNAGG	2 cut(s)	165, 434
Eco88I	CYCGRG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	4 cut(s)	255, 514, 698, 772
EcoRV	GATATC	1 cut(s)	448
EcoT22I	ATGCAT	2 cut(s)	559, 639
FaeI	CATG	3 cut(s)	709, 718, 813
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	705, 714, 809
FokI	GGATG	3 cut(s)	168, 259, 626
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	81, 814
HapII	CCGG	2 cut(s)	185, 224
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	3 cut(s)	709, 718, 813
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HinfI	GANTC	1 cut(s)	718
HpaII	CCGG	2 cut(s)	185, 224
HphI	GGTGA	2 cut(s)	28, 97
Hpy188I	TCNGA	2 cut(s)	402, 785
Hpy188III	TCNNGA	4 cut(s)	48, 185, 326, 715
HpyAV	CCTTC	5 cut(s)	70, 237, 358, 388, 451
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	6 cut(s)	25, 557, 617, 637, 652, 751
HpyF10VI	GCNNNNNNNGC	6 cut(s)	499, 520, 595, 670, 691, 763
HpyF3I	CTNAG	2 cut(s)	165, 434
Hsp92II	CATG	3 cut(s)	709, 718, 813
HspAI	GCGC	1 cut(s)	662
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	102, 135, 261, 397
LmnI	GCTCC	4 cut(s)	469, 535, 628, 690
Lsp1109I	GCAGC	8 cut(s)	115, 514, 601, 604, 607, 682, 763, 807
LweI	GCATC	5 cut(s)	501, 604, 624, 639, 672
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	4 cut(s)	104, 137, 263, 399
MboI	GATC	4 cut(s)	102, 135, 261, 397
MboII	GAAGA	6 cut(s)	21, 85, 100, 103, 163, 256
MflI	RGATCY	2 cut(s)	261, 397
MhlI	GDGCHC	1 cut(s)	474
MlsI	TGGCCA	1 cut(s)	814
MluCI	AATT	1 cut(s)	820
MluNI	TGGCCA	1 cut(s)	814
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	9 cut(s)	160, 201, 419, 460, 475, 543, 559, 572, 684
Mox20I	TGGCCA	1 cut(s)	814
Mph1103I	ATGCAT	2 cut(s)	559, 639
MroI	TCCGGA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	814
MseI	TTAA	2 cut(s)	123, 504
Msp20I	TGGCCA	1 cut(s)	814
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	185, 224
MspR9I	CCNGG	4 cut(s)	257, 516, 700, 774
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	4 cut(s)	257, 516, 700, 774
MwoI	GCNNNNNNNGC	6 cut(s)	499, 520, 595, 670, 691, 763
NdeII	GATC	4 cut(s)	102, 135, 261, 397
NlaIII	CATG	3 cut(s)	709, 718, 813
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	2 cut(s)	559, 639
NspV	TTCGAA	1 cut(s)	214
PagI	TCATGA	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	734
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	718
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	4 cut(s)	255, 514, 698, 772
PspGI	CCWGG	4 cut(s)	255, 514, 698, 772
PspPI	GGNCC	2 cut(s)	79, 253
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	261, 397
PvuII	CAGCTG	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	123, 504
Sau3AI	GATC	4 cut(s)	102, 135, 261, 397
Sau96I	GGNCC	2 cut(s)	79, 253
ScrFI	CCNGG	4 cut(s)	257, 516, 700, 774
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	5 cut(s)	501, 604, 624, 639, 672
SfcI	CTRYAG	1 cut(s)	142
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	820
SsiI	CCGC	5 cut(s)	131, 659, 731, 755, 764
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	4 cut(s)	255, 514, 698, 772
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	4 cut(s)	49, 214, 354, 423
TasI	AATT	1 cut(s)	820
TauI	GCSGC	4 cut(s)	134, 662, 733, 757
TfiI	GAWTC	1 cut(s)	718
Tru1I	TTAA	2 cut(s)	123, 504
Tru9I	TTAA	2 cut(s)	123, 504
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	8 cut(s)	128, 527, 589, 592, 595, 670, 751, 795
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	101, 110, 694, 731
VpaK11BI	GGWCC	1 cut(s)	253
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	2 cut(s)	559, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.