Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

56963872 .. 56964705

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG375000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTAGAAGAAAGGTGAGACTGCACTACATAGCCAATACAAGTTCCCGAAAAAACACATTTAGGAAAAGGAAGAATGGCCTTCTGAAGAAGATGAAAGAGATCACCACTCTTTGTGACATTAAGGCTGCGGCGATCATCTACAGTCCCTTTGAAGCCGAGCCTGAGGTCTTCCCAAATCATCCGGAAGCCCACGAAATGCTGACGAGGTTTCGAAATATGCCGGAGATGGACAAGACAAGAAGGATGATGGACCAGGAGATCTTTTTACGACAACGAATAGACAAAACCCGAGAGCAGATCAGAAAGCAGAAAAGAGACAATCGGGAGAAGCAGATTACTCAAGTTATGTTCGACTGCTTAAAGGGGAAAACCATCTCTAACCTTGAAAAGAAGGATCTGAATGACCTCACTTTTATAATCGAACAGAACCTCAGGGAGTTAGATATCAAAGAGCAGGCTACTGAAGAGCACAAGCAGGAGGAGAACCAGCTTAACCAGATGCTAGGTGCACCGGCTGCTGTGGAGCTTGACTTGACGAGGAATGCATTTGGAGAGGGAACAAGCAGAGGCGTGGAGCAGCAGCAGCACCCGAACACGATGGATGTACAGAGTATGGAGCAGATGCATTACCAAATGATGCAGGTTGCGGCGCAGAGGCAGCCTCAACAGATGCTCCAACAGCAACCCTGGTTCATGGACATCATGAATCCACCATCACCGCAAAAAATGGACTTCCTGCAGCCGCTACCATCGCTTCCACCAGGAGCGTTCGGAGACAACTGCAGCAGCAATGCTACATGGCCAAATAATTCGTCATTCCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

277

Amino Acids

32.54

Weight (kDa)

9.06

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	9.8e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	634
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	4 cut(s)	131, 650, 722, 746
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	803
AcuI	CTGAAG	2 cut(s)	107, 486
AfaI	GTAC	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	155, 389
AjnI	CCWGG	3 cut(s)	255, 689, 763
AluBI	AGCT	2 cut(s)	493, 529
AluI	AGCT	2 cut(s)	493, 529
Alw21I	GWGCWC	2 cut(s)	474, 514
Alw26I	GTCTC	3 cut(s)	13, 312, 771
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	79, 803
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	9 cut(s)	128, 518, 580, 583, 586, 661, 742, 786, 789
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	28, 97, 711
AsuII	TTCGAA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	2 cut(s)	165, 434
BaeGI	GKGCMC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	2 cut(s)	474, 514
BbvI	GCAGC	9 cut(s)	115, 505, 592, 595, 598, 673, 754, 798, 801
BccI	CCATC	6 cut(s)	223, 244, 383, 595, 724, 760
BciT130I	CCWGG	3 cut(s)	257, 691, 765
BcoDI	GTCTC	3 cut(s)	13, 312, 771
BfaI	CTAG	2 cut(s)	6, 506
BfmI	CTRYAG	3 cut(s)	142, 740, 784
BfuAI	ACCTGC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	261
Bme1390I	CCNGG	3 cut(s)	257, 691, 765
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	253
BmrFI	CCNGG	3 cut(s)	257, 691, 765
BmsI	GCATC	4 cut(s)	492, 615, 630, 663
BpiI	GAAGAC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	689
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bse118I	RCCGGY	1 cut(s)	514
Bse21I	CCTNAGG	2 cut(s)	165, 434
Bse3DI	GCAATG	1 cut(s)	799
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	3 cut(s)	257, 691, 765
BseDI	CCNNGG	1 cut(s)	689
BseGI	GGATG	3 cut(s)	181, 252, 610
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	2 cut(s)	156, 448
BseRI	GAGGAG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	9 cut(s)	115, 505, 592, 595, 598, 673, 754, 798, 801
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	81, 805
BsiHKAI	GWGCWC	2 cut(s)	474, 514
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	185, 224, 515
BslFI	GGGAC	1 cut(s)	132
BsmAI	GTCTC	3 cut(s)	13, 312, 771
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	81, 805
BsoBI	CYCGRG	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	474, 514
Bsp13I	TCCGGA	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	102, 135, 261, 300, 397
BspACI	CCGC	4 cut(s)	131, 650, 722, 746
BspANI	GGCC	2 cut(s)	81, 805
BspCNI	CTCAG	2 cut(s)	157, 447
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	705
BspMAI	CTGCAG	2 cut(s)	744, 788
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	1 cut(s)	405
BspQI	GCTCTTC	1 cut(s)	462
BspT104I	TTCGAA	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	799
BsrFI	RCCGGY	1 cut(s)	514
BsrGI	TGTACA	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	5 cut(s)	102, 135, 261, 300, 397
Bst2UI	CCWGG	3 cut(s)	257, 691, 765
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	607
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	165, 434
BstF5I	GGATG	3 cut(s)	181, 252, 610
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	5 cut(s)	105, 138, 264, 303, 400
BstMAI	GTCTC	3 cut(s)	13, 312, 771
BstMBI	GATC	5 cut(s)	102, 135, 261, 300, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	518, 586, 661, 682, 754
BstNI	CCWGG	3 cut(s)	257, 691, 765
BstSCI	CCNGG	3 cut(s)	255, 689, 763
BstSFI	CTRYAG	3 cut(s)	142, 740, 784
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	9 cut(s)	115, 505, 592, 595, 598, 673, 754, 798, 801
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	261, 397
BstYI	RGATCY	2 cut(s)	261, 397
Bsu36I	CCTNAGG	2 cut(s)	165, 434
BsuRI	GGCC	2 cut(s)	81, 805
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	3 cut(s)	181, 252, 610
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	3 cut(s)	697, 706, 801
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	2 cut(s)	165, 434
DpnI	GATC	5 cut(s)	104, 137, 263, 302, 399
DpnII	GATC	5 cut(s)	102, 135, 261, 300, 397
EaeI	YGGCCR	1 cut(s)	803
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	107, 486
Eco81I	CCTNAGG	2 cut(s)	165, 434
Eco88I	CYCGRG	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	255, 689, 763
EcoRV	GATATC	1 cut(s)	448
EcoT22I	ATGCAT	2 cut(s)	550, 630
FaeI	CATG	3 cut(s)	700, 709, 804
FaiI	YATR	8 cut(s)	32, 221, 350, 419, 617, 698, 707, 802
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	696, 705, 800
FokI	GGATG	3 cut(s)	168, 259, 617
FspBI	CTAG	2 cut(s)	6, 506
GlaI	GCGC	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	81, 805
HapII	CCGG	3 cut(s)	185, 224, 515
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	700, 709, 804
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HinfI	GANTC	1 cut(s)	709
HpaII	CCGG	3 cut(s)	185, 224, 515
HphI	GGTGA	3 cut(s)	28, 97, 711
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	4 cut(s)	87, 305, 402, 776
Hpy188III	TCNNGA	4 cut(s)	48, 185, 326, 706
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	3 cut(s)	92, 237, 388
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	7 cut(s)	25, 512, 548, 628, 643, 742, 786
HpyF10VI	GCNNNNNNNGC	5 cut(s)	518, 586, 661, 682, 754
HpyF3I	CTNAG	2 cut(s)	165, 434
Hsp92II	CATG	3 cut(s)	700, 709, 804
HspAI	GCGC	1 cut(s)	653
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	102, 135, 261, 300, 397
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	5 cut(s)	526, 577, 619, 681, 767
Lsp1109I	GCAGC	9 cut(s)	115, 505, 592, 595, 598, 673, 754, 798, 801
LweI	GCATC	4 cut(s)	492, 615, 630, 663
MaeI	CTAG	2 cut(s)	6, 506
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	5 cut(s)	104, 137, 263, 302, 399
MboI	GATC	5 cut(s)	102, 135, 261, 300, 397
MboII	GAAGA	6 cut(s)	21, 85, 100, 103, 163, 479
MflI	RGATCY	2 cut(s)	261, 397
MhlI	GDGCHC	2 cut(s)	474, 514
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	1 cut(s)	811
MluNI	TGGCCA	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	703
Mox20I	TGGCCA	1 cut(s)	805
Mph1103I	ATGCAT	2 cut(s)	550, 630
MroI	TCCGGA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	3 cut(s)	123, 362, 495
Msp20I	TGGCCA	1 cut(s)	805
MspI	CCGG	3 cut(s)	185, 224, 515
MspR9I	CCNGG	3 cut(s)	257, 691, 765
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	3 cut(s)	257, 691, 765
MwoI	GCNNNNNNNGC	5 cut(s)	518, 586, 661, 682, 754
NdeII	GATC	5 cut(s)	102, 135, 261, 300, 397
NlaIII	CATG	3 cut(s)	700, 709, 804
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	2 cut(s)	550, 630
NspV	TTCGAA	1 cut(s)	214
PagI	TCATGA	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	462
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	3 cut(s)	255, 689, 763
PspGI	CCWGG	3 cut(s)	255, 689, 763
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	2 cut(s)	744, 788
PsuI	RGATCY	2 cut(s)	261, 397
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	123, 362, 495
Sau3AI	GATC	5 cut(s)	102, 135, 261, 300, 397
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	3 cut(s)	257, 691, 765
SduI	GDGCHC	2 cut(s)	474, 514
SfaNI	GCATC	4 cut(s)	492, 615, 630, 663
SfcI	CTRYAG	3 cut(s)	142, 740, 784
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	811
SsiI	CCGC	4 cut(s)	131, 650, 722, 746
SspMI	CTAG	2 cut(s)	6, 506
StyD4I	CCNGG	3 cut(s)	255, 689, 763
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	214, 354, 423
TasI	AATT	1 cut(s)	811
TatI	WGTACW	1 cut(s)	607
TauI	GCSGC	3 cut(s)	134, 653, 748
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	3 cut(s)	123, 362, 495
Tru9I	TTAA	3 cut(s)	123, 362, 495
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	9 cut(s)	128, 518, 580, 583, 586, 661, 742, 786, 789
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	110, 685, 722
TspGWI	ACGGA	1 cut(s)	812
VneI	GTGCAC	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	253
XspI	CTAG	2 cut(s)	6, 506
Zsp2I	ATGCAT	2 cut(s)	550, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.