Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

59909422 .. 59909646

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG369500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCTAGAACGAAGGTGAAACTACAATACATTGTCAATAAGAGTTCCCGAAGAAACACATTTAGAAAAAGGAAGGAGGGCCTTCTGAAGAAGGTGTACGAGATCACCACTCTCTATGACATCAAGGCTGCGGCGATCATCTACAATCCCTTTGACGCAGAGCCGGAGGTCTTCCTAAGTCATCCGGAAGTCCACGAAATGCTGATAAGGTTCCAAGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

74

Amino Acids

8.83

Weight (kDa)

9.69

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	1.1e-13	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	28, 97
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	129, 132
BlsI	GCNGC	2 cut(s)	130, 133
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	184
BseGI	GGATG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	164, 185
BsnI	GGCC	1 cut(s)	81
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	102, 135
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	81
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	212
BssMI	GATC	2 cut(s)	102, 135
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	2 cut(s)	105, 138
BstMBI	GATC	2 cut(s)	102, 135
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	4 cut(s)	5, 81, 128, 163
CviKI_1	RGCY	4 cut(s)	5, 81, 128, 163
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	104, 137
DpnII	GATC	2 cut(s)	102, 135
Eco57I	CTGAAG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	79
FaiI	YATR	2 cut(s)	117, 221
Fnu4HI	GCNGC	2 cut(s)	129, 132
FokI	GGATG	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	129, 132
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	129, 132
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	2 cut(s)	164, 185
HgaI	GACGC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	164, 185
HphI	GGTGA	2 cut(s)	28, 97
Hpy166II	GTNNAC	2 cut(s)	97, 193
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	48, 185
Hpy8I	GTNNAC	2 cut(s)	97, 193
HpyAV	CCTTC	4 cut(s)	7, 67, 85, 92
HpyF3I	CTNAG	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	102, 135
LpnPI	CCDG	2 cut(s)	177, 198
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	6
MalI	GATC	2 cut(s)	104, 137
MboI	GATC	2 cut(s)	102, 135
MboII	GAAGA	3 cut(s)	63, 100, 163
MnlI	CCTC	2 cut(s)	70, 160
MroI	TCCGGA	1 cut(s)	184
MspI	CCGG	2 cut(s)	164, 185
NdeII	GATC	2 cut(s)	102, 135
NlaIV	GGNNCC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	130, 133
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SatI	GCNGC	2 cut(s)	129, 132
Sau3AI	GATC	2 cut(s)	102, 135
Sau96I	GGNCC	1 cut(s)	79
SetI	ASST	4 cut(s)	18, 96, 171, 212
SgeI	CNNG	7 cut(s)	18, 60, 112, 136, 176, 197, 206
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	6
TauI	GCSGC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	128
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.