Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

27686736 .. 27687353

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1186200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACTAGAAGGAAAGTGAAATTAGCCTTCATCATGAACGACTCGTCGCGAAAAGTGACATTCAGGAAAAGGAAGAGGGGATTCATGAAGAAGATGTTTGAAATCAATAAACTTTGTGATGTTCCAACATGTGCTGTCATATACAGTCCAGATGAGCCTCAACCTGATGTCTGGCCTAATCCTTCAGAAGCACGACGCCTCATTGAGCAGTTCGAGAACATGCCCGAGGAGGAGCGAAATAAAAAGATGGTGACCCATGAGATGTTTCTGAAGCAGATGGTTGAAAAGGAGCAACAGAAGGTGAACAAGCAAAAAAAAGAAAACCGAGAGGTGGAAATTTGGCTGGCCATGAACCAGTGCCTCACTGGGAAGCCCCTGACCGTCTTGGAGTTCATTGATATACAGGAAATAGGGTGGATGATCGACGGGAGATTGAAGGAAGTTGTCGCGATTCAGAGCCGGAAGGAAGACGAGCTAGCGAAGATGAATCAACCCTTAGGTGCACAACCGTCAGTGACTTCAGCGACAATTGATGAAAACATTCAGAACGCCATACAGGTGGTTCCATGGTCCATTGGGGACGTGCCGACCCCACAATCTGGTGATATGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

206

Amino Acids

23.84

Weight (kDa)

6.66

Isoelectric Point (pI)

64.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	8.5e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccII	CGCG	2 cut(s)	49, 449
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	3 cut(s)	168, 290, 504
AcyI	GRCGYC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	331, 599
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	101, 284, 436
AjiI	CACGTC	1 cut(s)	583
AluBI	AGCT	1 cut(s)	475
AluI	AGCT	1 cut(s)	475
Alw21I	GWGCWC	1 cut(s)	505
Alw44I	GTGCAC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	173, 345
ApaLI	GTGCAC	1 cut(s)	501
ApoI	RAATTY	1 cut(s)	336
Asp700I	GAANNNNTTC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	262, 313, 614
AsuNHI	GCTAGC	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	570
AxyI	CCTNAGG	1 cut(s)	496
BaeGI	GKGCMC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	505
BccI	CCATC	2 cut(s)	241, 271
BfaI	CTAG	2 cut(s)	6, 476
Bme18I	GGWCC	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	570
BmiI	GGNNCC	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	375
BmtI	GCTAGC	1 cut(s)	479
BmuI	ACTGGG	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	225, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 599
Bse1I	ACTGG	2 cut(s)	355, 370
Bse21I	CCTNAGG	1 cut(s)	496
BseDI	CCNNGG	2 cut(s)	225, 566
BseGI	GGATG	2 cut(s)	423, 616
BseLI	CCNNNNNNNGG	2 cut(s)	331, 599
BseNI	ACTGG	2 cut(s)	355, 370
BseRI	GAGGAG	2 cut(s)	242, 245
BseSI	GKGCMC	1 cut(s)	505
Bsh1236I	CGCG	2 cut(s)	49, 449
BshFI	GGCC	2 cut(s)	175, 347
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	331, 599
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	175, 347
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	566
Bsp68I	TCGCGA	2 cut(s)	49, 449
BspANI	GGCC	2 cut(s)	175, 347
BspFNI	CGCG	2 cut(s)	49, 449
BspHI	TCATGA	2 cut(s)	33, 84
BspLI	GGNNCC	1 cut(s)	564
BspOI	GCTAGC	1 cut(s)	479
BsrI	ACTGG	2 cut(s)	355, 370
BssECI	CCNNGG	2 cut(s)	225, 566
BssMI	GATC	1 cut(s)	420
BssNI	GRCGYC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	566
Bst4CI	ACNGT	3 cut(s)	146, 382, 510
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	345, 477
BstDEI	CTNAG	1 cut(s)	496
BstDSI	CCRYGG	1 cut(s)	566
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	423, 616
BstFNI	CGCG	2 cut(s)	49, 449
BstKTI	GATC	1 cut(s)	423
BstMBI	GATC	1 cut(s)	420
BstNSI	RCATGY	2 cut(s)	132, 223
BstPI	GGTNACC	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	2 cut(s)	49, 449
BstV2I	GAAGAC	1 cut(s)	474
BstXI	CCANNNNNNTGG	1 cut(s)	559
Bsu36I	CCTNAGG	1 cut(s)	496
BsuRI	GGCC	2 cut(s)	175, 347
BtgI	CCRYGG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	423, 616
BtsIMutI	CAGTG	3 cut(s)	362, 363, 519
BtuMI	TCGCGA	2 cut(s)	49, 449
Cac8I	GCNNGC	2 cut(s)	345, 477
CciI	TCATGA	2 cut(s)	33, 84
Cfr13I	GGNCC	1 cut(s)	570
CseI	GACGC	1 cut(s)	204
CviAII	CATG	7 cut(s)	34, 85, 129, 220, 257, 349, 567
CviJI	RGCY	8 cut(s)	26, 157, 175, 343, 347, 373, 459, 475
CviKI_1	RGCY	8 cut(s)	26, 157, 175, 343, 347, 373, 459, 475
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	1 cut(s)	422
DpnII	GATC	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	570
Eco57I	CTGAAG	3 cut(s)	168, 290, 504
Eco81I	CCTNAGG	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	7 cut(s)	37, 88, 132, 223, 260, 352, 570
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	7 cut(s)	33, 84, 128, 219, 256, 348, 566
FokI	GGATG	1 cut(s)	430
FspBI	CTAG	2 cut(s)	6, 476
HaeIII	GGCC	2 cut(s)	175, 347
HapII	CCGG	1 cut(s)	460
HgaI	GACGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	7 cut(s)	37, 88, 132, 223, 260, 352, 570
HinfI	GANTC	4 cut(s)	41, 81, 451, 487
HpaII	CCGG	1 cut(s)	460
HphI	GGTGA	3 cut(s)	262, 313, 614
Hpy166II	GTNNAC	2 cut(s)	304, 503
Hpy188I	TCNGA	4 cut(s)	187, 270, 456, 546
Hpy188III	TCNNGA	7 cut(s)	34, 48, 64, 85, 149, 214, 448
Hpy8I	GTNNAC	2 cut(s)	304, 503
Hpy99I	CGWCG	3 cut(s)	49, 198, 428
HpyAV	CCTTC	6 cut(s)	3, 37, 192, 292, 430, 457
HpyCH4III	ACNGT	3 cut(s)	146, 382, 510
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	496
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	7 cut(s)	37, 88, 132, 223, 260, 352, 570
Kzo9I	GATC	1 cut(s)	420
LmnI	GCTCC	2 cut(s)	232, 289
MaeI	CTAG	2 cut(s)	6, 476
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	3 cut(s)	55, 250, 514
MalI	GATC	1 cut(s)	422
MboI	GATC	1 cut(s)	420
MboII	GAAGA	5 cut(s)	85, 100, 103, 479, 493
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	505
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	3 cut(s)	20, 336, 528
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	69, 168, 209, 220, 223, 322, 371
Mox20I	TGGCCA	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	347
MspI	CCGG	1 cut(s)	460
MunI	CAATTG	1 cut(s)	528
MvnI	CGCG	2 cut(s)	49, 449
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	1 cut(s)	420
NheI	GCTAGC	1 cut(s)	475
NlaIII	CATG	7 cut(s)	37, 88, 132, 223, 260, 352, 570
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	3 cut(s)	55, 250, 514
NruI	TCGCGA	2 cut(s)	49, 449
NspI	RCATGY	2 cut(s)	132, 223
PagI	TCATGA	2 cut(s)	33, 84
PciI	ACATGT	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	81, 451, 487
PflMI	CCANNNNNTGG	1 cut(s)	599
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	570
RruI	TCGCGA	2 cut(s)	49, 449
RseI	CAYNNNNRTG	1 cut(s)	557
Sau3AI	GATC	1 cut(s)	420
Sau96I	GGNCC	1 cut(s)	570
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	7 cut(s)	166, 303, 333, 477, 502, 561, 585
SinI	GGWCC	1 cut(s)	570
SmiMI	CAYNNNNRTG	1 cut(s)	557
Sse9I	AATT	3 cut(s)	20, 336, 528
SspMI	CTAG	2 cut(s)	6, 476
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	3 cut(s)	146, 382, 510
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	2 cut(s)	213, 423
TasI	AATT	3 cut(s)	20, 336, 528
TfiI	GAWTC	3 cut(s)	81, 451, 487
TscAI	CASTG	3 cut(s)	362, 370, 519
TseFI	GTSAC	3 cut(s)	55, 250, 514
Tsp45I	GTSAC	3 cut(s)	55, 250, 514
TspDTI	ATGAA	8 cut(s)	19, 50, 73, 101, 365, 382, 500, 549
TspRI	CASTG	3 cut(s)	362, 370, 519
Van91I	CCANNNNNTGG	1 cut(s)	599
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	570
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	2 cut(s)	132, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	6, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.