Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

19738646 .. 19739841

Gene Structure 1196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGACAAGAAAGAAAGTGAAACTTGCTTACATTTCCAACGATTCTTCAAGAAAAGCGACTTTCAAAAAAAGAAAGAAGGGTTTGATGAAGAAGGTACACGAACTCTCGACTCTTTGTGGCATCACTGCATGTGCGATCATCTACAGCCCGTATGATACCAACCCTGAAGTGTGGCCATCAAATTCCGGTGTGCAAAGGGTGGTTTCAGAATTTAGGACACTCCCAGAGATGGATCAACACAAAAAGATGGTAGATCAAGAGGGTTTTCTCAAACAAAGAATCGCGAAAGCGACAGAAACTTTGAGGAGACAAAGAAAGGATAGTAGGGAGCTAGAGATGACTGAAGTCATGTTCCAATGTTTGATTGGAAACATGGAGATGTTTCATTTGAATATTGTGGATCTTAATGATTTGGGTTATATGATTGAGCAATATCTTAAAGATGTTAATCGCAGGATTGAGATTTTACGAAATTCTGGTACGGAGATTGGTGAATCTTCTTCTGTTGCGGTAGCTGCTTCTGAAGGGAATATACCAATGCCGAATTTGGTCGCTACAACAGCTCCCACCACTACAATTTATGAGGTGGGTTCTTCTTCCTCATTTGCGGCTGTCGCGAATTTTGTTAATCCTATTGATCTTCAACAATTTCGTCATCCGGCGGCTCAACATGTTGGACTTAATGAGCAACCTCAAAATCTAAATCTGAATTTAAATCAGAACTATAATCAAAATCAAGAATGGTTTATGGAAATGATGAACCATCCTGAGCAAATGAGGTATCAGACAGAGCAAATGGGATATCAATTCATGGATGATAACCACCACAACCACATCCATCACCAGCCACAGGAGCACCAACATCAGATCCATGACGAATCTTCCAACGCTCTTGATGCCGCCAACTCAAGCAGCATCATCCCTGTTACTAGTTCAAGTATTACCAATAAAACATGGTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

321

Amino Acids

36.82

Weight (kDa)

6.43

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	3.9e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	284, 617
AciI	CCGC	4 cut(s)	509, 608, 662, 900
AclWI	GGATC	3 cut(s)	240, 408, 862
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	6 cut(s)	181, 209, 472, 544, 619, 709
AcuI	CTGAAG	3 cut(s)	186, 363, 543
AfaI	GTAC	2 cut(s)	96, 481
AfiI	CCNNNNNNNGG	2 cut(s)	229, 850
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	5 cut(s)	48, 64, 391, 644, 936
AhlI	ACTAGT	1 cut(s)	929
AluBI	AGCT	3 cut(s)	331, 515, 563
AluI	AGCT	3 cut(s)	331, 515, 563
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	3 cut(s)	240, 408, 862
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	515, 912
ApoI	RAATTY	6 cut(s)	181, 209, 472, 544, 619, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
AsuHPI	GGTGA	2 cut(s)	503, 833
BalI	TGGCCA	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
Bbv12I	GWGCWC	1 cut(s)	858
BbvI	GCAGC	2 cut(s)	502, 924
BccI	CCATC	5 cut(s)	184, 223, 241, 771, 846
BcoDI	GTCTC	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	929
BfaI	CTAG	2 cut(s)	332, 930
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	5 cut(s)	516, 609, 663, 900, 913
BlsI	GCNGC	5 cut(s)	517, 610, 664, 901, 914
BmiI	GGNNCC	1 cut(s)	959
BmsI	GCATC	3 cut(s)	129, 886, 924
BoxI	GACNNNNGTC	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	892
BsaBI	GATNNNNATC	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 850
Bse8I	GATNNNNATC	1 cut(s)	447
BseGI	GGATG	5 cut(s)	655, 763, 820, 834, 918
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	229, 850
BseMII	CTCAG	1 cut(s)	759
BseRI	GAGGAG	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	502, 924
Bsh1236I	CGCG	2 cut(s)	284, 617
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	858
BsiSI	CCGG	2 cut(s)	186, 659
BslI	CCNNNNNNNGG	2 cut(s)	229, 850
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp143I	GATC	6 cut(s)	135, 232, 253, 400, 637, 867
Bsp68I	TCGCGA	2 cut(s)	284, 617
BspACI	CCGC	4 cut(s)	509, 608, 662, 900
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	760
BspFNI	CGCG	2 cut(s)	284, 617
BspLI	GGNNCC	1 cut(s)	959
BspPI	GGATC	3 cut(s)	240, 408, 862
BssMI	GATC	6 cut(s)	135, 232, 253, 400, 637, 867
BstDEI	CTNAG	1 cut(s)	768
BstF5I	GGATG	5 cut(s)	655, 763, 820, 834, 918
BstFNI	CGCG	2 cut(s)	284, 617
BstKTI	GATC	6 cut(s)	138, 235, 256, 403, 640, 870
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	6 cut(s)	135, 232, 253, 400, 637, 867
BstMWI	GCNNNNNNNGC	5 cut(s)	515, 560, 614, 853, 896
BstNSI	RCATGY	2 cut(s)	132, 674
BstPAI	GACNNNNGTC	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	284, 617
BstV1I	GCAGC	2 cut(s)	502, 924
BstX2I	RGATCY	2 cut(s)	400, 867
BstYI	RGATCY	2 cut(s)	400, 867
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	5 cut(s)	655, 763, 820, 834, 918
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
BtuMI	TCGCGA	2 cut(s)	284, 617
Csp6I	GTAC	2 cut(s)	95, 480
CviAII	CATG	7 cut(s)	129, 349, 373, 671, 811, 872, 954
CviJI	RGCY	8 cut(s)	147, 175, 331, 515, 563, 611, 665, 847
CviKI_1	RGCY	8 cut(s)	147, 175, 331, 515, 563, 611, 665, 847
CviQI	GTAC	2 cut(s)	95, 480
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	6 cut(s)	137, 234, 255, 402, 639, 869
DpnII	GATC	6 cut(s)	135, 232, 253, 400, 637, 867
DraI	TTTAAA	1 cut(s)	714
EaeI	YGGCCR	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	803
Eco57I	CTGAAG	3 cut(s)	186, 363, 543
EcoRV	GATATC	1 cut(s)	803
FaeI	CATG	7 cut(s)	132, 352, 376, 674, 814, 875, 957
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	7 cut(s)	128, 348, 372, 670, 810, 871, 953
Fnu4HI	GCNGC	5 cut(s)	516, 609, 663, 900, 913
FokI	GGATG	5 cut(s)	642, 750, 821, 827, 905
Fsp4HI	GCNGC	5 cut(s)	516, 609, 663, 900, 913
FspBI	CTAG	2 cut(s)	332, 930
GluI	GCNGC	5 cut(s)	516, 609, 663, 900, 913
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	186, 659
Hin1II	CATG	7 cut(s)	132, 352, 376, 674, 814, 875, 957
HinfI	GANTC	5 cut(s)	41, 109, 279, 494, 878
HpaII	CCGG	2 cut(s)	186, 659
HphI	GGTGA	2 cut(s)	503, 833
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	6 cut(s)	208, 523, 708, 720, 786, 867
Hpy188III	TCNNGA	8 cut(s)	48, 106, 257, 283, 616, 737, 767, 893
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	70, 85, 518
HpyCH4V	TGCA	2 cut(s)	128, 193
HpyF10VI	GCNNNNNNNGC	5 cut(s)	515, 560, 614, 853, 896
HpyF3I	CTNAG	1 cut(s)	768
Hsp92II	CATG	7 cut(s)	132, 352, 376, 674, 814, 875, 957
Kzo9I	GATC	6 cut(s)	135, 232, 253, 400, 637, 867
LmnI	GCTCC	3 cut(s)	328, 568, 853
Lsp1109I	GCAGC	2 cut(s)	502, 924
LweI	GCATC	3 cut(s)	129, 886, 924
MaeI	CTAG	2 cut(s)	332, 930
MaeIII	GTNAC	1 cut(s)	925
MalI	GATC	6 cut(s)	137, 234, 255, 402, 639, 869
MboI	GATC	6 cut(s)	135, 232, 253, 400, 637, 867
MboII	GAAGA	8 cut(s)	36, 100, 489, 492, 585, 588, 632, 873
MflI	RGATCY	2 cut(s)	400, 867
MhlI	GDGCHC	1 cut(s)	858
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	9 cut(s)	181, 209, 472, 544, 576, 619, 647, 709, 806
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	3 cut(s)	60, 655, 909
MnlI	CCTC	6 cut(s)	253, 297, 577, 610, 702, 771
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	6 cut(s)	405, 438, 447, 627, 681, 713
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	175
MspI	CCGG	2 cut(s)	186, 659
MvnI	CGCG	2 cut(s)	284, 617
MwoI	GCNNNNNNNGC	5 cut(s)	515, 560, 614, 853, 896
NdeII	GATC	6 cut(s)	135, 232, 253, 400, 637, 867
NlaIII	CATG	7 cut(s)	132, 352, 376, 674, 814, 875, 957
NlaIV	GGNNCC	1 cut(s)	959
NruI	TCGCGA	2 cut(s)	284, 617
NspI	RCATGY	2 cut(s)	132, 674
PciI	ACATGT	1 cut(s)	670
PfeI	GAWTC	4 cut(s)	41, 279, 494, 878
PkrI	GCNGC	5 cut(s)	517, 610, 664, 901, 914
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PscI	ACATGT	1 cut(s)	670
PshAI	GACNNNNGTC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	400, 867
RruI	TCGCGA	2 cut(s)	284, 617
RsaI	GTAC	2 cut(s)	96, 481
RsaNI	GTAC	2 cut(s)	95, 480
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	6 cut(s)	405, 438, 447, 627, 681, 713
SatI	GCNGC	5 cut(s)	516, 609, 663, 900, 913
Sau3AI	GATC	6 cut(s)	135, 232, 253, 400, 637, 867
SchI	GAGTC	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	858
SetI	ASST	7 cut(s)	96, 333, 517, 565, 588, 694, 782
SfaNI	GCATC	3 cut(s)	129, 886, 924
SfcI	CTRYAG	1 cut(s)	142
SmiI	ATTTAAAT	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	907
SmoI	CTYRAG	1 cut(s)	907
SpeI	ACTAGT	1 cut(s)	929
Sse9I	AATT	9 cut(s)	181, 209, 472, 544, 576, 619, 647, 709, 806
SsiI	CCGC	4 cut(s)	509, 608, 662, 900
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	332, 930
SwaI	ATTTAAAT	1 cut(s)	714
TaqI	TCGA	1 cut(s)	107
TasI	AATT	9 cut(s)	181, 209, 472, 544, 576, 619, 647, 709, 806
TauI	GCSGC	3 cut(s)	611, 665, 902
TfiI	GAWTC	4 cut(s)	41, 279, 494, 878
Tru1I	TTAA	6 cut(s)	405, 438, 447, 627, 681, 713
Tru9I	TTAA	6 cut(s)	405, 438, 447, 627, 681, 713
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	515, 912
TspDTI	ATGAA	4 cut(s)	101, 374, 773, 799
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	6 cut(s)	181, 209, 472, 544, 619, 709
XceI	RCATGY	2 cut(s)	132, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XspI	CTAG	2 cut(s)	332, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.