Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

35661696 .. 35662310

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG342000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTAGAAGGAAGGTGAGACTACACTACATTGCCAATGAGACTTCCCGACGAATGACATTTAGAAAAAGAAAGAAAGGCCTTTTGAAAAAGGTGGGTGAGATAACCACTCTCTGTGACATCAAGGCCGCGGCGATCATCTACAAGCCCTTTGACGCCGAGCCAGAGGTGTTCCTAAATCATCCGGAAGTCCACGAACTGCTAATGAAGTTCCGAGATATGCCGCAGATAGATAAGACAAGAAAGATGATCAACCAGGAGACCTTTTTACGACAGCGAATTGACAAAGTCCGGGAGCATATCAGAAAGCAAAGAAGAGACAACCGAGAAAAGGAGATCACTCAAGTTCTGAAGAAGGTGGGTGAGATAACCACTCTCTGTGACATCAAGGCCGCGGCGATCATCTACAGCTCCTTTGACTCAGAGCCGGAGGTGTTCCCAAGTCATCCGGAAGTCCACGAACTGCTAATGAAGTTCCGAGATATGCCGCAGATGGACAAGACAAGAGAGATGGTTGACCAGAAGACATTCTATGACAACGAATCGACAAAATTTGGGAGCAGATCAAAAAGCAAAGACGAGACAATCAAGAAAAGGAGATCACTCAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

204

Amino Acids

24.39

Weight (kDa)

9.89

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	4e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	131, 395
AccIII	TCCGGA	2 cut(s)	184, 448
AciI	CCGC	6 cut(s)	129, 131, 224, 393, 395, 488
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw26I	GTCTC	5 cut(s)	13, 35, 254, 312, 575
Aor13HI	TCCGGA	2 cut(s)	184, 448
AoxI	GGCC	3 cut(s)	79, 126, 390
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	28, 110, 374
BbsI	GAAGAC	1 cut(s)	530
BccI	CCATC	2 cut(s)	487, 505
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	5 cut(s)	13, 35, 254, 312, 575
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	6 cut(s)	129, 132, 224, 393, 396, 488
BlsI	GCNGC	6 cut(s)	130, 133, 225, 394, 397, 489
Bme1390I	CCNGG	2 cut(s)	257, 293
BmrFI	CCNGG	2 cut(s)	257, 293
BpiI	GAAGAC	1 cut(s)	530
BpuEI	CTTGAG	2 cut(s)	327, 590
BpuMI	CCSGG	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	129, 393
BsaWI	WCCGGW	2 cut(s)	184, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	30
BseAI	TCCGGA	2 cut(s)	184, 448
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	129, 393
BseGI	GGATG	2 cut(s)	181, 445
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	435
Bsh1236I	CGCG	2 cut(s)	131, 395
BshFI	GGCC	3 cut(s)	81, 128, 392
BsiSI	CCGG	4 cut(s)	185, 292, 428, 449
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	5 cut(s)	13, 35, 254, 312, 575
BsnI	GGCC	3 cut(s)	81, 128, 392
Bso31I	GGTCTC	1 cut(s)	254
Bsp13I	TCCGGA	2 cut(s)	184, 448
Bsp143I	GATC	6 cut(s)	135, 249, 336, 399, 563, 599
BspACI	CCGC	6 cut(s)	129, 131, 224, 393, 395, 488
BspANI	GGCC	3 cut(s)	81, 128, 392
BspCNI	CTCAG	1 cut(s)	434
BspEI	TCCGGA	2 cut(s)	184, 448
BspFNI	CGCG	2 cut(s)	131, 395
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	129, 393
BssMI	GATC	6 cut(s)	135, 249, 336, 399, 563, 599
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	2 cut(s)	129, 393
BstF5I	GGATG	2 cut(s)	181, 445
BstFNI	CGCG	2 cut(s)	131, 395
BstKTI	GATC	6 cut(s)	138, 252, 339, 402, 566, 602
BstMAI	GTCTC	5 cut(s)	13, 35, 254, 312, 575
BstMBI	GATC	6 cut(s)	135, 249, 336, 399, 563, 599
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	255, 291
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	2 cut(s)	131, 395
BstV2I	GAAGAC	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	81, 128, 392
BtgI	CCRYGG	2 cut(s)	129, 393
BtsCI	GGATG	2 cut(s)	181, 445
Cfr42I	CCGCGG	2 cut(s)	132, 396
CseI	GACGC	1 cut(s)	164
CviJI	RGCY	8 cut(s)	5, 81, 128, 148, 163, 392, 411, 427
CviKI_1	RGCY	8 cut(s)	5, 81, 128, 148, 163, 392, 411, 427
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	6 cut(s)	137, 251, 338, 401, 565, 601
DpnII	GATC	6 cut(s)	135, 249, 336, 399, 563, 599
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	255
FaiI	YATR	4 cut(s)	221, 300, 485, 534
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	129, 132, 224, 393, 396, 488
FokI	GGATG	2 cut(s)	168, 432
Fsp4HI	GCNGC	6 cut(s)	129, 132, 224, 393, 396, 488
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	6 cut(s)	129, 132, 224, 393, 396, 488
HaeIII	GGCC	3 cut(s)	81, 128, 392
HapII	CCGG	4 cut(s)	185, 292, 428, 449
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	2 cut(s)	419, 542
HpaII	CCGG	4 cut(s)	185, 292, 428, 449
HphI	GGTGA	3 cut(s)	28, 110, 374
Hpy166II	GTNNAC	3 cut(s)	193, 457, 517
Hpy188I	TCNGA	6 cut(s)	215, 305, 351, 424, 479, 614
Hpy188III	TCNNGA	4 cut(s)	48, 185, 449, 589
Hpy8I	GTNNAC	3 cut(s)	193, 457, 517
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	3, 7, 349
HpyF3I	CTNAG	1 cut(s)	421
Hsp92I	GRCGYC	1 cut(s)	156
Kpn2I	TCCGGA	2 cut(s)	184, 448
Ksp22I	TGATCA	1 cut(s)	249
KspI	CCGCGG	2 cut(s)	132, 396
Kzo9I	GATC	6 cut(s)	135, 249, 336, 399, 563, 599
LmnI	GCTCC	3 cut(s)	295, 416, 558
LpnPI	CCDG	8 cut(s)	177, 198, 242, 269, 305, 441, 462, 533
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	116, 380
MalI	GATC	6 cut(s)	137, 251, 338, 401, 565, 601
MboI	GATC	6 cut(s)	135, 249, 336, 399, 563, 599
MboII	GAAGA	3 cut(s)	327, 364, 535
MluCI	AATT	2 cut(s)	279, 551
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	2 cut(s)	160, 424
MroI	TCCGGA	2 cut(s)	184, 448
MroXI	GAANNNNTTC	1 cut(s)	527
MspA1I	CMGCKG	2 cut(s)	131, 395
MspI	CCGG	4 cut(s)	185, 292, 428, 449
MspR9I	CCNGG	2 cut(s)	257, 293
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	2 cut(s)	131, 395
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	6 cut(s)	135, 249, 336, 399, 563, 599
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	116, 380
PceI	AGGCCT	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	542
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	6 cut(s)	130, 133, 225, 394, 397, 489
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PsyI	GACNNNGTC	1 cut(s)	287
SacII	CCGCGG	2 cut(s)	132, 396
SatI	GCNGC	6 cut(s)	129, 132, 224, 393, 396, 488
Sau3AI	GATC	6 cut(s)	135, 249, 336, 399, 563, 599
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	257, 293
SetI	ASST	7 cut(s)	18, 96, 171, 266, 360, 413, 435
SfcI	CTRYAG	1 cut(s)	406
Sfr303I	CCGCGG	2 cut(s)	132, 396
SgrBI	CCGCGG	2 cut(s)	132, 396
SmlI	CTYRAG	2 cut(s)	342, 605
SmoI	CTYRAG	2 cut(s)	342, 605
Sse9I	AATT	2 cut(s)	279, 551
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	6 cut(s)	129, 131, 224, 393, 395, 488
SspMI	CTAG	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	255, 291
TaqI	TCGA	1 cut(s)	545
TasI	AATT	2 cut(s)	279, 551
TauI	GCSGC	6 cut(s)	131, 134, 226, 395, 398, 490
TfiI	GAWTC	1 cut(s)	542
TseFI	GTSAC	2 cut(s)	116, 380
Tsp45I	GTSAC	2 cut(s)	116, 380
TspDTI	ATGAA	2 cut(s)	221, 485
Tth111I	GACNNNGTC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.