Rorug06G0033600
MADS Family

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000249
Physical Location & Seq
Forward (+)
4102217 .. 4113435
11219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0033600.1

Sequence Viewer

Length: 1530 bp
ATGAAGCAGCAACTGACAGAACCCCTCGTGGCCCGAACGCAAGAACAGCCTTCTATTCCTCAATCTGATCCTGTTCCTTCCTTTCTTATCACATATCTATACGTAGGCCACTTCTTGGCCAGATGGGGTACCAGAATGTGGGACTTCTCTGTTGGTTTATACATGATAAACATTTGGCCAGACTCTTTACTCTTTGCTGCTATATATGGTGCAGTAGAATCAGCTTCTACTGCACTTTTTGGACCCATTATTGGACATTGGGTGGACAGATTTCCATATTCAAAGGTTCTCCGAATTTGGCTGGTAACACAGAACCTCTCTTTTGTGATTGCGGGAGGCACCGTGATGGCATTGCTGGTCTATGCAGATTTGAAGCTCACAAATTTTTATGCATTCGTCTTTCTCATAATCTTAACCAACATCTCAGGAGCTGTTGGAGTTCTTTCTACTCTTGCTGGTACCATCTTGGTCGAAAGAGACTGGGCGGTGGTGATATCAGAAGGGCATTCTCCAGAAGTACTGACAAAGATTAATTCAGTCATGAGGCGTATTGATCTGTTCTGCAAGCTCTGTGCTCCTGTCCTAACCGGATTAATTATCAGCTTCGTATCATTAGAAGCTTCTGCTTTCACTTTAGCACTCTGGAATACTATATCTATTTGGCTGGAATATTGGCTATTTACTTCTGTATACAAGGGGATTCCGGCTTTAGGTGAAAGCGGCCAAAGGAAGTTATCAAGATCTTTAGAGAGTGATCAGAACAAGACAAGAAGTAACTTGCTTTCCAGTGATGATGAAGATGATGTAGAAATTTCCCAAGAAAGCTGGATAAACAGAAGAATTAAACAGTTCTCAAGGATTCCATATGTTAGTGCATGGCGAGTATACTTGCAGCAAGATGTGGTACTCCCTGGAGTAGCTCTGGCTTTGTTGTATTTCACTGTCCTCAGGTTTGGAACATTAATGACAGCTACCTTGGAATGGGAAGGTATACCTGCATACGTAATTGGAATAGTGCGTGGAGTAGGCGCTGCGGTCGGAATTGCTGCAACAGTGGTTTATCCAATCTTGCAATCTCATATCTTAACACTTAGAACTGGACTCTGGTCCATCTGGTCTCAGTGGACATTCCTCCTACTATGTGTTGGTTCAATATGGGTCCCCAATAGAGTTTTGTCAGCATGTATGCTGATGGCAGGAGTAGGTACTTCTCGGCTTGGATTATGGATGTTTGACTTGGCAGTAATCCAACAAATGCAGGATCAAGTTCCTGAATTGGAACGTTGTGTAGTGGGAGGTGTTCAGAGCTCCCTTCAGTCTAGTATGGATTTGATGGGGTATGTCATGGCAATAATTATATCTAATCCACAGGATTTCTGGAAGTTGACTCTGGTGTCGTTCGGGGTGGTAACATTGGCTGCATTGCTCTACACCCTACACCTTTACCGTGTCCGGAAGCACCTCCTTCACTTTGAGAAACTTACTCCGTTTCTTAAGTGCATTACTAGATCACAATCTGCAAATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

509

Amino Acids

57.0

Weight (kDa)

8.13

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPN1 PF06963 30 - 470 4.8e-160 Ferroportin1 (FPN1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1393
Acc36I ACCTGC 1 cut(s) 1003
Acc65I GGTACC 2 cut(s) 128, 458
AccB1I GGYRCC 3 cut(s) 128, 338, 458
AccB7I CCANNNNNTGG 2 cut(s) 115, 138
AccI GTMKAC 3 cut(s) 690, 885, 991
AccIII TCCGGA 1 cut(s) 1452
AciI CCGC 4 cut(s) 332, 485, 720, 1034
AclI AACGTT 1 cut(s) 1282
AclWI GGATC 2 cut(s) 62, 1269
AcoI YGGCCR 3 cut(s) 117, 176, 721
AcsI RAATTY 3 cut(s) 294, 382, 810
AcuI CTGAAG 1 cut(s) 1298
AfaI GTAC 5 cut(s) 130, 460, 519, 906, 1207
AfiI CCNNNNNNNGG 5 cut(s) 115, 138, 251, 710, 981
AflII CTTAAG 1 cut(s) 1493
AgsI TTSAA 3 cut(s) 282, 373, 1152
AjnI CCWGG 1 cut(s) 910
Alw21I GWGCWC 2 cut(s) 577, 1310
Alw26I GTCTC 2 cut(s) 471, 1122
AlwI GGATC 2 cut(s) 62, 1269
AlwNI CAGNNNCTG 2 cut(s) 13, 431
Aor13HI TCCGGA 1 cut(s) 1452
AoxI GGCC 5 cut(s) 30, 106, 117, 176, 721
ApeKI GCWGC 6 cut(s) 7, 197, 892, 1031, 1046, 1418
ApoI RAATTY 3 cut(s) 294, 382, 810
AseI ATTAAT 3 cut(s) 531, 593, 962
Asp718I GGTACC 2 cut(s) 128, 458
AspLEI GCGC 1 cut(s) 1031
AspS9I GGNCC 4 cut(s) 31, 242, 1107, 1159
AsuHPI GGTGA 2 cut(s) 502, 725
AvaII GGWCC 3 cut(s) 242, 1107, 1159
AxyI CCTNAGG 1 cut(s) 947
BalI TGGCCA 2 cut(s) 119, 178
BanI GGYRCC 3 cut(s) 128, 338, 458
BanII GRGCYC 1 cut(s) 1310
BauI CACGAG 1 cut(s) 26
Bbv12I GWGCWC 2 cut(s) 577, 1310
BbvI GCAGC 6 cut(s) 19, 184, 904, 1018, 1033, 1405
BccI CCATC 6 cut(s) 117, 340, 470, 1118, 1186, 1327
BciT130I CCWGG 1 cut(s) 912
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 471, 1122
BfaI CTAG 2 cut(s) 1320, 1506
BfoI RGCGCY 1 cut(s) 1032
BfrI CTTAAG 1 cut(s) 1493
BfuAI ACCTGC 1 cut(s) 1003
BglII AGATCT 1 cut(s) 740
BisI GCNGC 7 cut(s) 8, 198, 721, 893, 1032, 1047, 1419
BlsI GCNGC 7 cut(s) 9, 199, 722, 894, 1033, 1048, 1420
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 912
Bme18I GGWCC 3 cut(s) 242, 1107, 1159
BmgT120I GGNCC 4 cut(s) 31, 242, 1107, 1159
BmiI GGNNCC 6 cut(s) 130, 244, 340, 460, 1160, 1161
BmrFI CCNGG 1 cut(s) 912
BmrI ACTGGG 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 490
BoxI GACNNNNGTC 1 cut(s) 1105
BpmI CTGGAG 2 cut(s) 495, 933
BpuEI CTTGAG 1 cut(s) 838
BsaAI YACGTR 2 cut(s) 103, 1003
BsaBI GATNNNNATC 1 cut(s) 1513
BsaI GGTCTC 1 cut(s) 1122
BsaJI CCNNGG 2 cut(s) 910, 975
BsaWI WCCGGW 2 cut(s) 587, 1452
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 138, 251, 710, 981
Bse1I ACTGG 3 cut(s) 485, 786, 1102
Bse21I CCTNAGG 1 cut(s) 947
Bse3DI GCAATG 2 cut(s) 350, 1421
Bse8I GATNNNNATC 1 cut(s) 1513
BseAI TCCGGA 1 cut(s) 1452
BseBI CCWGG 1 cut(s) 912
BseDI CCNNGG 2 cut(s) 910, 975
BseGI GGATG 1 cut(s) 1233
BseJI GATNNNNATC 1 cut(s) 1513
BseLI CCNNNNNNNGG 5 cut(s) 115, 138, 251, 710, 981
BseMI GCAATG 2 cut(s) 350, 1421
BseMII CTCAG 3 cut(s) 438, 961, 1133
BseNI ACTGG 3 cut(s) 485, 786, 1102
BseXI GCAGC 6 cut(s) 19, 184, 904, 1018, 1033, 1405
BsgI GTGCAG 2 cut(s) 216, 231
Bsh1285I CGRYCG 1 cut(s) 1038
BshFI GGCC 5 cut(s) 32, 108, 119, 178, 723
BshNI GGYRCC 3 cut(s) 128, 338, 458
BsiEI CGRYCG 1 cut(s) 1038
BsiHKAI GWGCWC 2 cut(s) 577, 1310
BsiSI CCGG 3 cut(s) 588, 704, 1453
BslFI GGGAC 2 cut(s) 155, 1145
BslI CCNNNNNNNGG 5 cut(s) 115, 138, 251, 710, 981
BsmAI GTCTC 2 cut(s) 471, 1122
BsmFI GGGAC 2 cut(s) 155, 1145
BsmI GAATGC 2 cut(s) 392, 505
BsnI GGCC 5 cut(s) 32, 108, 119, 178, 723
Bso31I GGTCTC 1 cut(s) 1122
Bsp1286I GDGCHC 2 cut(s) 577, 1310
Bsp13I TCCGGA 1 cut(s) 1452
Bsp143I GATC 6 cut(s) 67, 553, 740, 754, 1261, 1508
BspACI CCGC 4 cut(s) 332, 485, 720, 1034
BspANI GGCC 5 cut(s) 32, 108, 119, 178, 723
BspCNI CTCAG 3 cut(s) 437, 960, 1132
BspEI TCCGGA 1 cut(s) 1452
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 6 cut(s) 130, 244, 340, 460, 1160, 1161
BspMI ACCTGC 1 cut(s) 1003
BspPI GGATC 2 cut(s) 62, 1269
BspT107I GGYRCC 3 cut(s) 128, 338, 458
BspTI CTTAAG 1 cut(s) 1493
BspTNI GGTCTC 1 cut(s) 1122
BsrDI GCAATG 2 cut(s) 350, 1421
BsrI ACTGG 3 cut(s) 485, 786, 1102
BssECI CCNNGG 2 cut(s) 910, 975
BssMI GATC 6 cut(s) 67, 553, 740, 754, 1261, 1508
BssNAI GTATAC 3 cut(s) 691, 886, 992
BssSI CACGAG 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 975
Bst1107I GTATAC 3 cut(s) 691, 886, 992
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 5 cut(s) 343, 849, 943, 1054, 1448
BstAFI CTTAAG 1 cut(s) 1493
BstBAI YACGTR 2 cut(s) 103, 1003
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 4 cut(s) 424, 947, 1091, 1119
BstF5I GGATG 1 cut(s) 1233
BstH2I RGCGCY 1 cut(s) 1032
BstHHI GCGC 1 cut(s) 1031
BstKTI GATC 6 cut(s) 70, 556, 743, 757, 1264, 1511
BstMAI GTCTC 2 cut(s) 471, 1122
BstMBI GATC 6 cut(s) 67, 553, 740, 754, 1261, 1508
BstMCI CGRYCG 1 cut(s) 1038
BstMWI GCNNNNNNNGC 2 cut(s) 46, 230
BstNI CCWGG 1 cut(s) 912
BstNSI RCATGY 1 cut(s) 1185
BstPAI GACNNNNGTC 1 cut(s) 1105
BstSCI CCNGG 1 cut(s) 910
BstSNI TACGTA 2 cut(s) 103, 1003
BstV1I GCAGC 6 cut(s) 19, 184, 904, 1018, 1033, 1405
BstX2I RGATCY 1 cut(s) 740
BstYI RGATCY 1 cut(s) 740
BstZ17I GTATAC 3 cut(s) 691, 886, 992
Bsu36I CCTNAGG 1 cut(s) 947
BsuRI GGCC 5 cut(s) 32, 108, 119, 178, 723
BtsCI GGATG 1 cut(s) 1233
BtsIMutI CAGTG 4 cut(s) 793, 939, 1059, 1127
BveI ACCTGC 1 cut(s) 1003
Cac8I GCNNGC 1 cut(s) 566
CaiI CAGNNNCTG 2 cut(s) 13, 431
CciI TCATGA 1 cut(s) 540
CfoI GCGC 1 cut(s) 1031
Cfr13I GGNCC 4 cut(s) 31, 242, 1107, 1159
Csp6I GTAC 5 cut(s) 129, 459, 518, 905, 1206
CviAII CATG 5 cut(s) 163, 541, 876, 1182, 1345
CviQI GTAC 5 cut(s) 129, 459, 518, 905, 1206
DdeI CTNAG 4 cut(s) 424, 947, 1091, 1119
DpnI GATC 6 cut(s) 69, 555, 742, 756, 1263, 1510
DpnII GATC 6 cut(s) 67, 553, 740, 754, 1261, 1508
DrdI GACNNNNNNGTC 1 cut(s) 1393
DseDI GACNNNNNNGTC 1 cut(s) 1393
EaeI YGGCCR 3 cut(s) 117, 176, 721
Ecl136II GAGCTC 1 cut(s) 1308
Eco105I TACGTA 2 cut(s) 103, 1003
Eco130I CCWWGG 1 cut(s) 975
Eco24I GRGCYC 1 cut(s) 1310
Eco31I GGTCTC 1 cut(s) 1122
Eco32I GATATC 1 cut(s) 495
Eco47I GGWCC 3 cut(s) 242, 1107, 1159
Eco53kI GAGCTC 1 cut(s) 1308
Eco57I CTGAAG 1 cut(s) 1298
Eco81I CCTNAGG 1 cut(s) 947
EcoICRI GAGCTC 1 cut(s) 1308
EcoO109I RGGNCCY 1 cut(s) 1159
EcoRII CCWGG 1 cut(s) 910
EcoRV GATATC 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 975
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 1310
ErhI CCWWGG 1 cut(s) 975
FaeI CATG 5 cut(s) 166, 544, 879, 1185, 1348
FaqI GGGAC 2 cut(s) 155, 1145
FatI CATG 5 cut(s) 162, 540, 875, 1181, 1344
FauI CCCGC 1 cut(s) 325
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 3 cut(s) 690, 885, 991
Fnu4HI GCNGC 7 cut(s) 8, 198, 721, 893, 1032, 1047, 1419
FokI GGATG 1 cut(s) 1240
FriOI GRGCYC 1 cut(s) 1310
Fsp4HI GCNGC 7 cut(s) 8, 198, 721, 893, 1032, 1047, 1419
FspBI CTAG 2 cut(s) 1320, 1506
GlaI GCGC 1 cut(s) 1030
GluI GCNGC 7 cut(s) 8, 198, 721, 893, 1032, 1047, 1419
GsuI CTGGAG 2 cut(s) 495, 933
HaeII RGCGCY 1 cut(s) 1032
HaeIII GGCC 5 cut(s) 32, 108, 119, 178, 723
HapII CCGG 3 cut(s) 588, 704, 1453
HhaI GCGC 1 cut(s) 1031
Hin1II CATG 5 cut(s) 166, 544, 879, 1185, 1348
Hin6I GCGC 1 cut(s) 1029
HinP1I GCGC 1 cut(s) 1029
HincII GTYRAC 1 cut(s) 1386
HindII GTYRAC 1 cut(s) 1386
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 6 cut(s) 182, 218, 700, 859, 1101, 1387
HpaII CCGG 3 cut(s) 588, 704, 1453
HphI GGTGA 2 cut(s) 502, 725
Hpy166II GTNNAC 6 cut(s) 265, 691, 886, 992, 1125, 1386
Hpy188I TCNGA 6 cut(s) 67, 293, 499, 759, 1040, 1305
Hpy188III TCNNGA 8 cut(s) 426, 512, 541, 643, 738, 1271, 1378, 1453
Hpy8I GTNNAC 6 cut(s) 265, 691, 886, 992, 1125, 1386
HpyAV CCTTC 6 cut(s) 60, 87, 494, 980, 1322, 1475
HpyCH4III ACNGT 5 cut(s) 343, 849, 943, 1054, 1448
HpyCH4IV ACGT 3 cut(s) 102, 1002, 1282
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 230
HpyF3I CTNAG 4 cut(s) 424, 947, 1091, 1119
HpySE526I ACGT 3 cut(s) 102, 1002, 1282
Hsp92II CATG 5 cut(s) 166, 544, 879, 1185, 1348
HspAI GCGC 1 cut(s) 1029
KflI GGGWCCC 1 cut(s) 1159
Kpn2I TCCGGA 1 cut(s) 1452
KpnI GGTACC 2 cut(s) 132, 462
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 6 cut(s) 67, 553, 740, 754, 1261, 1508
LmnI GCTCC 3 cut(s) 428, 580, 1313
Lsp1109I GCAGC 6 cut(s) 19, 184, 904, 1018, 1033, 1405
MaeI CTAG 2 cut(s) 1320, 1506
MaeII ACGT 3 cut(s) 102, 1002, 1282
MaeIII GTNAC 3 cut(s) 304, 773, 1408
MalI GATC 6 cut(s) 69, 555, 742, 756, 1263, 1510
MboI GATC 6 cut(s) 67, 553, 740, 754, 1261, 1508
MboII GAAGA 2 cut(s) 809, 849
MflI RGATCY 1 cut(s) 740
MhlI GDGCHC 2 cut(s) 577, 1310
MlsI TGGCCA 2 cut(s) 119, 178
MluNI TGGCCA 2 cut(s) 119, 178
MlyI GAGTC 3 cut(s) 176, 1095, 1381
MmeI TCCRAC 3 cut(s) 415, 1018, 1273
MnlI CCTC 9 cut(s) 35, 69, 326, 329, 537, 956, 1142, 1289, 1472
Mox20I TGGCCA 2 cut(s) 119, 178
Mph1103I ATGCAT 1 cut(s) 394
MroI TCCGGA 1 cut(s) 1452
MscI TGGCCA 2 cut(s) 119, 178
MseI TTAA 7 cut(s) 413, 531, 593, 843, 962, 1085, 1494
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 2 cut(s) 119, 178
MspCI CTTAAG 1 cut(s) 1493
MspI CCGG 3 cut(s) 588, 704, 1453
MspR9I CCNGG 1 cut(s) 912
Mva1269I GAATGC 2 cut(s) 392, 505
MvaI CCWGG 1 cut(s) 912
MwoI GCNNNNNNNGC 2 cut(s) 46, 230
NdeI CATATG 1 cut(s) 865
NdeII GATC 6 cut(s) 67, 553, 740, 754, 1261, 1508
NlaIII CATG 5 cut(s) 166, 544, 879, 1185, 1348
NlaIV GGNNCC 6 cut(s) 130, 244, 340, 460, 1160, 1161
NmeAIII GCCGAG 1 cut(s) 1192
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 1 cut(s) 1185
PagI TCATGA 1 cut(s) 540
PctI GAATGC 2 cut(s) 392, 505
PfeI GAWTC 3 cut(s) 218, 700, 859
PflMI CCANNNNNTGG 2 cut(s) 115, 138
PkrI GCNGC 7 cut(s) 9, 199, 722, 894, 1033, 1048, 1420
PleI GAGTC 3 cut(s) 176, 1095, 1381
PpsI GAGTC 3 cut(s) 176, 1095, 1381
Ppu21I YACGTR 2 cut(s) 103, 1003
PpuMI RGGWCCY 1 cut(s) 1159
PshAI GACNNNNGTC 1 cut(s) 1105
PshBI ATTAAT 3 cut(s) 531, 593, 962
Psp124BI GAGCTC 1 cut(s) 1310
Psp1406I AACGTT 1 cut(s) 1282
Psp5II RGGWCCY 1 cut(s) 1159
Psp6I CCWGG 1 cut(s) 910
PspGI CCWGG 1 cut(s) 910
PspN4I GGNNCC 6 cut(s) 130, 244, 340, 460, 1160, 1161
PspPI GGNCC 4 cut(s) 31, 242, 1107, 1159
PspPPI RGGWCCY 1 cut(s) 1159
PstNI CAGNNNCTG 2 cut(s) 13, 431
PsuI RGATCY 1 cut(s) 740
RsaI GTAC 5 cut(s) 130, 460, 519, 906, 1207
RsaNI GTAC 5 cut(s) 129, 459, 518, 905, 1206
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 1310
SaqAI TTAA 7 cut(s) 413, 531, 593, 843, 962, 1085, 1494
SatI GCNGC 7 cut(s) 8, 198, 721, 893, 1032, 1047, 1419
Sau3AI GATC 6 cut(s) 67, 553, 740, 754, 1261, 1508
Sau96I GGNCC 4 cut(s) 31, 242, 1107, 1159
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 3 cut(s) 176, 1095, 1381
ScrFI CCNGG 1 cut(s) 912
SduI GDGCHC 2 cut(s) 577, 1310
SinI GGWCC 3 cut(s) 242, 1107, 1159
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 853, 1493
SmoI CTYRAG 2 cut(s) 853, 1493
SnaBI TACGTA 2 cut(s) 103, 1003
SsiI CCGC 4 cut(s) 332, 485, 720, 1034
SspI AATATT 1 cut(s) 671
SspMI CTAG 2 cut(s) 1320, 1506
SstI GAGCTC 1 cut(s) 1310
StyD4I CCNGG 1 cut(s) 910
StyI CCWWGG 1 cut(s) 975
TaaI ACNGT 5 cut(s) 343, 849, 943, 1054, 1448
TaiI ACGT 3 cut(s) 105, 1005, 1285
TaqI TCGA 1 cut(s) 471
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 3 cut(s) 218, 700, 859
Tru1I TTAA 7 cut(s) 413, 531, 593, 843, 962, 1085, 1494
Tru9I TTAA 7 cut(s) 413, 531, 593, 843, 962, 1085, 1494
TscAI CASTG 4 cut(s) 793, 946, 1059, 1127
TseI GCWGC 6 cut(s) 7, 197, 892, 1031, 1046, 1418
TspDTI ATGAA 2 cut(s) 17, 810
TspGWI ACGGA 1 cut(s) 1476
TspRI CASTG 4 cut(s) 793, 946, 1059, 1127
Van91I CCANNNNNTGG 2 cut(s) 115, 138
Vha464I CTTAAG 1 cut(s) 1493
VpaK11BI GGWCC 3 cut(s) 242, 1107, 1159
VspI ATTAAT 3 cut(s) 531, 593, 962
XapI RAATTY 3 cut(s) 294, 382, 810
XceI RCATGY 1 cut(s) 1185
XcmI CCANNNNNNNNNTGG 1 cut(s) 1374
XmiI GTMKAC 3 cut(s) 690, 885, 991
XspI CTAG 2 cut(s) 1320, 1506
ZrmI AGTACT 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.