Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

46350146 .. 46350799

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG369200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTAGAAGGAAGGTGAGACTGCACTATATTGCCAATGAGAATTCCCGACGAACAACATTTAGAAAAAGAAAGAAGGGTCTTCTGAAGAAGGTGGGAGAGATAACCACTCTCTGTGACATCAAGGCCGCGGTGATCATCTACAGTCCCTTTGATGGCGAGCCGAAGGTGTTCCCAAGTCATCCAGAAGTCCACGAAGTGCTGACGAAGTTTCGAGATATGTCGCAGATGGACAAGACAAGAAAGATGGTCGACCAGGAGACATTCTTACGACAGCGAATCAAAAAAGTCCGGGAGCAGATTAGAAAGTTGAAAAGAGACAACCGAGAAAAGGAGATCACTCAAGTCATGTTCGGTTGTTTGAAGGGGAGAACACTCTCTGACCTAGAAAGGAAGGATCTGCAAGACCTCAATTTTATCATTGAATGCAACCTCAGGGAGCTTGAAATCAAACAGTGGGCTGCCGATGAGCATAATGCTGATGAGCAAAAGCAGGAGGAAAACCAAGAGAACCAGCTCAACCAGGTGCAAGCTGAATCGACTGTGGTGGAGCTCTGTCTAACGACGAGGAATGCATTTGGGGAGGGAACCAACAGTGGCGTGAAGCAGCAACAACACCACCAAGTCGCGATGGAGGTGCAGACTATAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

217

Amino Acids

25.54

Weight (kDa)

9.12

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	9.1e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	131, 629
AciI	CCGC	2 cut(s)	129, 131
AclWI	GGATC	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	155, 331
AgsI	TTSAA	4 cut(s)	313, 364, 425, 446
AjnI	CCWGG	2 cut(s)	255, 522
AluBI	AGCT	4 cut(s)	442, 517, 533, 553
AluI	AGCT	4 cut(s)	442, 517, 533, 553
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	13, 254, 312
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	461, 607
ApoI	RAATTY	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	28, 145
AxyI	CCTNAGG	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	448, 619
BccI	CCATC	4 cut(s)	149, 223, 241, 625
BcgI	CGANNNNNNTGC	2 cut(s)	619, 653
BciT130I	CCWGG	2 cut(s)	257, 524
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	3 cut(s)	13, 254, 312
BfaI	CTAG	2 cut(s)	6, 386
BfmI	CTRYAG	2 cut(s)	142, 645
BisI	GCNGC	3 cut(s)	129, 462, 608
BlsI	GCNGC	3 cut(s)	130, 463, 609
Bme1390I	CCNGG	3 cut(s)	257, 293, 524
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	3 cut(s)	257, 293, 524
BpiI	GAAGAC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 331
Bse21I	CCTNAGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	257, 524
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	155, 331
BseMII	CTCAG	1 cut(s)	448
BseXI	GCAGC	2 cut(s)	448, 619
BsgI	GTGCAG	1 cut(s)	8
Bsh1236I	CGCG	2 cut(s)	131, 629
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	155, 331
BsmAI	GTCTC	3 cut(s)	13, 254, 312
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	2 cut(s)	431, 577
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	135, 336, 397
Bsp68I	TCGCGA	1 cut(s)	629
BspACI	CCGC	2 cut(s)	129, 131
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	447
BspFNI	CGCG	2 cut(s)	131, 629
BspLI	GGNNCC	1 cut(s)	589
BspPI	GGATC	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	135, 336, 397
Bst2UI	CCWGG	2 cut(s)	257, 524
Bst4CI	ACNGT	4 cut(s)	146, 456, 544, 596
BstC8I	GCNNGC	2 cut(s)	161, 531
BstDEI	CTNAG	1 cut(s)	434
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	2 cut(s)	131, 629
BstKTI	GATC	3 cut(s)	138, 339, 400
BstMAI	GTCTC	3 cut(s)	13, 254, 312
BstMBI	GATC	3 cut(s)	135, 336, 397
BstNI	CCWGG	2 cut(s)	257, 524
BstSCI	CCNGG	3 cut(s)	255, 291, 522
BstSFI	CTRYAG	2 cut(s)	142, 645
BstUI	CGCG	2 cut(s)	131, 629
BstV1I	GCAGC	2 cut(s)	448, 619
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	461, 601
BtuMI	TCGCGA	1 cut(s)	629
Cac8I	GCNNGC	2 cut(s)	161, 531
Cfr42I	CCGCGG	1 cut(s)	132
CsiI	ACCWGGT	1 cut(s)	522
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	8 cut(s)	5, 128, 163, 442, 461, 517, 533, 553
CviKI_1	RGCY	8 cut(s)	5, 128, 163, 442, 461, 517, 533, 553
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	3 cut(s)	137, 338, 399
DpnII	GATC	3 cut(s)	135, 336, 397
DraIII	CACNNNGTG	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	255, 522
EcoT22I	ATGCAT	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	555
FaeI	CATG	1 cut(s)	352
FaiI	YATR	5 cut(s)	30, 221, 350, 474, 647
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	3 cut(s)	129, 462, 608
FokI	GGATG	1 cut(s)	168
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	3 cut(s)	129, 462, 608
FspBI	CTAG	2 cut(s)	6, 386
GluI	GCNGC	3 cut(s)	129, 462, 608
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	1 cut(s)	352
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	279, 536
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	2 cut(s)	28, 145
Hpy166II	GTNNAC	2 cut(s)	193, 253
Hpy188I	TCNGA	2 cut(s)	87, 382
Hpy188III	TCNNGA	4 cut(s)	48, 185, 215, 628
Hpy8I	GTNNAC	2 cut(s)	193, 253
Hpy99I	CGWCG	2 cut(s)	54, 568
HpyAV	CCTTC	7 cut(s)	3, 7, 70, 85, 160, 358, 388
HpyCH4III	ACNGT	4 cut(s)	146, 456, 544, 596
HpyCH4V	TGCA	6 cut(s)	25, 403, 429, 529, 575, 640
HpyF3I	CTNAG	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	135
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	135, 336, 397
LmnI	GCTCC	3 cut(s)	295, 439, 550
LpnPI	CCDG	9 cut(s)	198, 242, 269, 305, 421, 479, 509, 527, 536
Lsp1109I	GCAGC	2 cut(s)	448, 619
MabI	ACCWGGT	1 cut(s)	522
MaeI	CTAG	2 cut(s)	6, 386
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	137, 338, 399
MboI	GATC	3 cut(s)	135, 336, 397
MboII	GAAGA	2 cut(s)	74, 100
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	2 cut(s)	43, 412
MnlI	CCTC	6 cut(s)	419, 443, 490, 561, 577, 628
Mph1103I	ATGCAT	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	3 cut(s)	257, 293, 524
Mva1269I	GAATGC	2 cut(s)	431, 577
MvaI	CCWGG	2 cut(s)	257, 524
MvnI	CGCG	2 cut(s)	131, 629
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	3 cut(s)	135, 336, 397
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	116
NruI	TCGCGA	1 cut(s)	629
NsiI	ATGCAT	1 cut(s)	577
PctI	GAATGC	2 cut(s)	431, 577
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	279, 536
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	3 cut(s)	130, 463, 609
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	255, 522
PspGI	CCWGG	2 cut(s)	255, 522
PspN4I	GGNNCC	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	397
RruI	TCGCGA	1 cut(s)	629
SacI	GAGCTC	1 cut(s)	555
SacII	CCGCGG	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	3 cut(s)	129, 462, 608
Sau3AI	GATC	3 cut(s)	135, 336, 397
ScrFI	CCNGG	3 cut(s)	257, 293, 524
SduI	GDGCHC	1 cut(s)	555
SexAI	ACCWGGT	1 cut(s)	522
SfcI	CTRYAG	2 cut(s)	142, 645
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	2 cut(s)	43, 412
SsiI	CCGC	2 cut(s)	129, 131
SspMI	CTAG	2 cut(s)	6, 386
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	3 cut(s)	255, 291, 522
TaaI	ACNGT	4 cut(s)	146, 456, 544, 596
TaqI	TCGA	3 cut(s)	214, 252, 539
TasI	AATT	2 cut(s)	43, 412
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	279, 536
TscAI	CASTG	2 cut(s)	461, 601
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	461, 607
Tsp45I	GTSAC	1 cut(s)	116
TspRI	CASTG	2 cut(s)	461, 601
XapI	RAATTY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	6, 386
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.