Agamous-like MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SRF-TF | PF00319 | 10 - 50 | 5.4e-16 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 125 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 758 |
| AccI | GTMKAC | 1 cut(s) | 243 |
| AccII | CGCG | 1 cut(s) | 131 |
| AciI | CCGC | 6 cut(s) | 131, 215, 441, 557, 674, 723 |
| AclWI | GGATC | 1 cut(s) | 396 |
| AcuI | CTGAAG | 1 cut(s) | 107 |
| AfaI | GTAC | 2 cut(s) | 454, 738 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 155, 483, 484, 508, 758 |
| AgsI | TTSAA | 2 cut(s) | 355, 433 |
| AjnI | CCWGG | 3 cut(s) | 246, 375, 751 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 500, 532 |
| AluBI | AGCT | 2 cut(s) | 301, 758 |
| AluI | AGCT | 2 cut(s) | 301, 758 |
| Alw26I | GTCTC | 3 cut(s) | 245, 303, 760 |
| AlwI | GGATC | 1 cut(s) | 396 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 758 |
| Ama87I | CYCGRG | 1 cut(s) | 481 |
| AsuHPI | GGTGA | 4 cut(s) | 145, 417, 601, 737 |
| AvaI | CYCGRG | 1 cut(s) | 481 |
| BanII | GRGCYC | 1 cut(s) | 751 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 720, 752 |
| BbsI | GAAGAC | 1 cut(s) | 478 |
| BccI | CCATC | 5 cut(s) | 149, 214, 232, 580, 713 |
| BciT130I | CCWGG | 3 cut(s) | 248, 377, 753 |
| BclI | TGATCA | 1 cut(s) | 135 |
| BcoDI | GTCTC | 3 cut(s) | 245, 303, 760 |
| BfaI | CTAG | 2 cut(s) | 6, 465 |
| BfmI | CTRYAG | 1 cut(s) | 142 |
| BisI | GCNGC | 2 cut(s) | 215, 675 |
| BlsI | GCNGC | 2 cut(s) | 216, 676 |
| Bme1390I | CCNGG | 3 cut(s) | 248, 377, 753 |
| BmeT110I | CYCGRG | 1 cut(s) | 481 |
| BmiI | GGNNCC | 3 cut(s) | 500, 748, 777 |
| BmrFI | CCNGG | 3 cut(s) | 248, 377, 753 |
| BmsI | GCATC | 1 cut(s) | 564 |
| BpiI | GAAGAC | 1 cut(s) | 478 |
| BpuEI | CTTGAG | 1 cut(s) | 318 |
| BsaJI | CCNNGG | 1 cut(s) | 751 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 747, 777 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 155, 483, 484, 508, 758 |
| Bse1I | ACTGG | 2 cut(s) | 509, 777 |
| Bse3DI | GCAATG | 1 cut(s) | 30 |
| BseBI | CCWGG | 3 cut(s) | 248, 377, 753 |
| BseDI | CCNNGG | 1 cut(s) | 751 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 155, 483, 484, 508, 758 |
| BseMI | GCAATG | 1 cut(s) | 30 |
| BseMII | CTCAG | 1 cut(s) | 683 |
| BseNI | ACTGG | 2 cut(s) | 509, 777 |
| BseRI | GAGGAG | 3 cut(s) | 578, 695, 704 |
| Bsh1236I | CGCG | 1 cut(s) | 131 |
| BsiHKCI | CYCGRG | 1 cut(s) | 481 |
| BslFI | GGGAC | 2 cut(s) | 111, 671 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 155, 483, 484, 508, 758 |
| BsmAI | GTCTC | 3 cut(s) | 245, 303, 760 |
| BsmFI | GGGAC | 2 cut(s) | 111, 671 |
| BsoBI | CYCGRG | 1 cut(s) | 481 |
| Bsp1286I | GDGCHC | 1 cut(s) | 751 |
| Bsp143I | GATC | 4 cut(s) | 135, 291, 327, 388 |
| BspACI | CCGC | 6 cut(s) | 131, 215, 441, 557, 674, 723 |
| BspCNI | CTCAG | 1 cut(s) | 682 |
| BspFNI | CGCG | 1 cut(s) | 131 |
| BspLI | GGNNCC | 3 cut(s) | 500, 748, 777 |
| BspPI | GGATC | 1 cut(s) | 396 |
| BsrDI | GCAATG | 1 cut(s) | 30 |
| BsrI | ACTGG | 2 cut(s) | 509, 777 |
| BssECI | CCNNGG | 1 cut(s) | 751 |
| BssMI | GATC | 4 cut(s) | 135, 291, 327, 388 |
| Bst2UI | CCWGG | 3 cut(s) | 248, 377, 753 |
| Bst4CI | ACNGT | 1 cut(s) | 536 |
| Bst6I | CTCTTC | 2 cut(s) | 618, 723 |
| BstC8I | GCNNGC | 1 cut(s) | 161 |
| BstDEI | CTNAG | 1 cut(s) | 669 |
| BstFNI | CGCG | 1 cut(s) | 131 |
| BstKTI | GATC | 4 cut(s) | 138, 294, 330, 391 |
| BstMAI | GTCTC | 3 cut(s) | 245, 303, 760 |
| BstMBI | GATC | 4 cut(s) | 135, 291, 327, 388 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 755 |
| BstNI | CCWGG | 3 cut(s) | 248, 377, 753 |
| BstNSI | RCATGY | 1 cut(s) | 422 |
| BstSCI | CCNGG | 3 cut(s) | 246, 375, 751 |
| BstSFI | CTRYAG | 1 cut(s) | 142 |
| BstUI | CGCG | 1 cut(s) | 131 |
| BstV2I | GAAGAC | 1 cut(s) | 478 |
| BstX2I | RGATCY | 1 cut(s) | 388 |
| BstYI | RGATCY | 1 cut(s) | 388 |
| BtgZI | GCGATG | 1 cut(s) | 732 |
| BtsIMutI | CAGTG | 1 cut(s) | 502 |
| Cac8I | GCNNGC | 1 cut(s) | 161 |
| CaiI | CAGNNNCTG | 1 cut(s) | 758 |
| Csp6I | GTAC | 2 cut(s) | 453, 737 |
| CviAII | CATG | 3 cut(s) | 340, 419, 741 |
| CviJI | RGCY | 6 cut(s) | 5, 147, 163, 301, 749, 758 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 147, 163, 301, 749, 758 |
| CviQI | GTAC | 2 cut(s) | 453, 737 |
| DdeI | CTNAG | 1 cut(s) | 669 |
| DpnI | GATC | 4 cut(s) | 137, 293, 329, 390 |
| DpnII | GATC | 4 cut(s) | 135, 291, 327, 388 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 125 |
| Eam1104I | CTCTTC | 2 cut(s) | 618, 723 |
| EarI | CTCTTC | 2 cut(s) | 618, 723 |
| Eco24I | GRGCYC | 1 cut(s) | 751 |
| Eco57I | CTGAAG | 1 cut(s) | 107 |
| Eco88I | CYCGRG | 1 cut(s) | 481 |
| EcoRII | CCWGG | 3 cut(s) | 246, 375, 751 |
| EcoT38I | GRGCYC | 1 cut(s) | 751 |
| FaeI | CATG | 3 cut(s) | 343, 422, 744 |
| FaiI | YATR | 5 cut(s) | 212, 341, 420, 621, 742 |
| FaqI | GGGAC | 2 cut(s) | 111, 671 |
| FatI | CATG | 3 cut(s) | 339, 418, 740 |
| FauI | CCCGC | 1 cut(s) | 434 |
| FbaI | TGATCA | 1 cut(s) | 135 |
| FblI | GTMKAC | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 2 cut(s) | 215, 675 |
| FriOI | GRGCYC | 1 cut(s) | 751 |
| Fsp4HI | GCNGC | 2 cut(s) | 215, 675 |
| FspBI | CTAG | 2 cut(s) | 6, 465 |
| GluI | GCNGC | 2 cut(s) | 215, 675 |
| Hin1II | CATG | 3 cut(s) | 343, 422, 744 |
| HincII | GTYRAC | 2 cut(s) | 244, 666 |
| HindII | GTYRAC | 2 cut(s) | 244, 666 |
| HinfI | GANTC | 1 cut(s) | 270 |
| HpaI | GTTAAC | 1 cut(s) | 666 |
| HphI | GGTGA | 4 cut(s) | 145, 417, 601, 737 |
| Hpy166II | GTNNAC | 3 cut(s) | 184, 244, 666 |
| Hpy188I | TCNGA | 3 cut(s) | 87, 296, 416 |
| Hpy188III | TCNNGA | 4 cut(s) | 48, 284, 317, 652 |
| Hpy8I | GTNNAC | 3 cut(s) | 184, 244, 666 |
| Hpy99I | CGWCG | 1 cut(s) | 54 |
| HpyAV | CCTTC | 9 cut(s) | 70, 85, 349, 379, 439, 502, 586, 604, 629 |
| HpyCH4III | ACNGT | 1 cut(s) | 536 |
| HpyCH4V | TGCA | 2 cut(s) | 25, 394 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 755 |
| HpyF3I | CTNAG | 1 cut(s) | 669 |
| Hsp92II | CATG | 3 cut(s) | 343, 422, 744 |
| Ksp22I | TGATCA | 1 cut(s) | 135 |
| KspAI | GTTAAC | 1 cut(s) | 666 |
| Kzo9I | GATC | 4 cut(s) | 135, 291, 327, 388 |
| LmnI | GCTCC | 2 cut(s) | 746, 755 |
| LweI | GCATC | 1 cut(s) | 564 |
| MaeI | CTAG | 2 cut(s) | 6, 465 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MalI | GATC | 4 cut(s) | 137, 293, 329, 390 |
| MboI | GATC | 4 cut(s) | 135, 291, 327, 388 |
| MboII | GAAGA | 8 cut(s) | 21, 100, 480, 483, 595, 619, 635, 740 |
| MflI | RGATCY | 1 cut(s) | 388 |
| MhlI | GDGCHC | 1 cut(s) | 751 |
| MluCI | AATT | 2 cut(s) | 403, 616 |
| MmeI | TCCRAC | 1 cut(s) | 498 |
| MseI | TTAA | 2 cut(s) | 615, 665 |
| MspR9I | CCNGG | 3 cut(s) | 248, 377, 753 |
| MvaI | CCWGG | 3 cut(s) | 248, 377, 753 |
| MvnI | CGCG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 755 |
| NdeII | GATC | 4 cut(s) | 135, 291, 327, 388 |
| NlaIII | CATG | 3 cut(s) | 343, 422, 744 |
| NlaIV | GGNNCC | 3 cut(s) | 500, 748, 777 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| NspI | RCATGY | 1 cut(s) | 422 |
| PaeR7I | CTCGAG | 1 cut(s) | 481 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 183 |
| PfeI | GAWTC | 1 cut(s) | 270 |
| PflFI | GACNNNGTC | 1 cut(s) | 179 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 758 |
| PkrI | GCNGC | 2 cut(s) | 216, 676 |
| Psp6I | CCWGG | 3 cut(s) | 246, 375, 751 |
| PspGI | CCWGG | 3 cut(s) | 246, 375, 751 |
| PspN4I | GGNNCC | 3 cut(s) | 500, 748, 777 |
| PspXI | VCTCGAGB | 1 cut(s) | 481 |
| PstNI | CAGNNNCTG | 1 cut(s) | 758 |
| PsuI | RGATCY | 1 cut(s) | 388 |
| PsyI | GACNNNGTC | 1 cut(s) | 179 |
| RsaI | GTAC | 2 cut(s) | 454, 738 |
| RsaNI | GTAC | 2 cut(s) | 453, 737 |
| SalI | GTCGAC | 1 cut(s) | 242 |
| SaqAI | TTAA | 2 cut(s) | 615, 665 |
| SatI | GCNGC | 2 cut(s) | 215, 675 |
| Sau3AI | GATC | 4 cut(s) | 135, 291, 327, 388 |
| ScrFI | CCNGG | 3 cut(s) | 248, 377, 753 |
| SduI | GDGCHC | 1 cut(s) | 751 |
| SfaNI | GCATC | 1 cut(s) | 564 |
| SfcI | CTRYAG | 1 cut(s) | 142 |
| Sfr274I | CTCGAG | 1 cut(s) | 481 |
| SlaI | CTCGAG | 1 cut(s) | 481 |
| SmlI | CTYRAG | 2 cut(s) | 333, 481 |
| SmoI | CTYRAG | 2 cut(s) | 333, 481 |
| Sse9I | AATT | 2 cut(s) | 403, 616 |
| SsiI | CCGC | 6 cut(s) | 131, 215, 441, 557, 674, 723 |
| SspMI | CTAG | 2 cut(s) | 6, 465 |
| StyD4I | CCNGG | 3 cut(s) | 246, 375, 751 |
| TaaI | ACNGT | 1 cut(s) | 536 |
| TaqI | TCGA | 6 cut(s) | 49, 243, 273, 316, 482, 651 |
| TasI | AATT | 2 cut(s) | 403, 616 |
| TatI | WGTACW | 1 cut(s) | 452 |
| TauI | GCSGC | 2 cut(s) | 217, 677 |
| TfiI | GAWTC | 1 cut(s) | 270 |
| Tru1I | TTAA | 2 cut(s) | 615, 665 |
| Tru9I | TTAA | 2 cut(s) | 615, 665 |
| TscAI | CASTG | 1 cut(s) | 509 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 4 cut(s) | 19, 398, 596, 636 |
| TspGWI | ACGGA | 1 cut(s) | 711 |
| TspRI | CASTG | 1 cut(s) | 509 |
| Tth111I | GACNNNGTC | 1 cut(s) | 179 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 758 |
| XceI | RCATGY | 1 cut(s) | 422 |
| XhoI | CTCGAG | 1 cut(s) | 481 |
| XmiI | GTMKAC | 1 cut(s) | 243 |
| XspI | CTAG | 2 cut(s) | 6, 465 |