Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

11770254 .. 11771600

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011691

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTAGAAGAAAGGTGAGACTACACTACATAACCAATGCGAGTTCCCGAAAAAACACATTTAGGAAAAGGAAGAAGGGCCTTCTAAAGAAGATGAAAGAGATCACCACTCTTTGTGACATTAAGGCTGCGGCAATCATCTACAGTCCTTTCGAAGCTGAGCCTGAGGTCTTCCCAAATCATCCGGAAGCCCATGAAATGCTGACAAGGTTTCGAAATATGCCGGAGATGGACAAGACAAGAAGGATGATGGACCAGGAGATCTTCTTACGACAACGAATAGATAAAACCCGAGAGCAGATCAGAAAGCAGAAAAGAGACAATCGGGAGAAGCAAATTACTCAAGTTATGTTCGACTGCTTGAAGGGGAAAACCATCTCTAACCTTGAAAAGAAGGATCTGAATGACCTCACATGTATTTGCTTATTTTCTGATGTAAAAACCACATTTGCTTTGTATTTCAAAGACTATGAGTCTGTAGAAATCCTAGTTTCTAAGTGTGATGAGAAAATCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

173

Amino Acids

20.57

Weight (kDa)

9.64

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	4.3e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	405
AflIII	ACRYGT	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	364, 389, 463
AhdI	GACNNNNNGTC	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw26I	GTCTC	2 cut(s)	13, 312
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	79, 253
AsuHPI	GGTGA	2 cut(s)	28, 97
AsuII	TTCGAA	2 cut(s)	153, 214
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	3 cut(s)	223, 244, 383
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	13, 312
BfaI	CTAG	2 cut(s)	6, 488
BfmI	CTRYAG	2 cut(s)	142, 477
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	2 cut(s)	129, 132
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	2 cut(s)	130, 133
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	253
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	2 cut(s)	79, 253
BmrFI	CCNGG	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	163
Bpu1102I	GCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	2 cut(s)	153, 214
BpuEI	CTTGAG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	184
Bse21I	CCTNAGG	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	181, 252
BseMII	CTCAG	2 cut(s)	150, 156
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	185, 224
BsmAI	GTCTC	2 cut(s)	13, 312
BsnI	GGCC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	291
Bsp119I	TTCGAA	2 cut(s)	153, 214
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	102, 261, 300, 397
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	151, 157
BspEI	TCCGGA	1 cut(s)	184
BspPI	GGATC	1 cut(s)	405
BspT104I	TTCGAA	2 cut(s)	153, 214
BssMI	GATC	4 cut(s)	102, 261, 300, 397
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	146
BstBI	TTCGAA	2 cut(s)	153, 214
BstDEI	CTNAG	3 cut(s)	159, 165, 495
BstF5I	GGATG	2 cut(s)	181, 252
BstKTI	GATC	4 cut(s)	105, 264, 303, 400
BstMAI	GTCTC	2 cut(s)	13, 312
BstMBI	GATC	4 cut(s)	102, 261, 300, 397
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	142, 477
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	261, 397
BstYI	RGATCY	2 cut(s)	261, 397
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	181, 252
Cfr13I	GGNCC	2 cut(s)	79, 253
CviAII	CATG	2 cut(s)	194, 414
CviJI	RGCY	6 cut(s)	5, 81, 128, 158, 163, 191
CviKI_1	RGCY	6 cut(s)	5, 81, 128, 158, 163, 191
DdeI	CTNAG	3 cut(s)	159, 165, 495
DpnI	GATC	4 cut(s)	104, 263, 302, 399
DpnII	GATC	4 cut(s)	102, 261, 300, 397
DriI	GACNNNNNGTC	1 cut(s)	472
Eam1105I	GACNNNNNGTC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	253
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	197, 417
FaiI	YATR	6 cut(s)	32, 195, 221, 350, 415, 471
FatI	CATG	2 cut(s)	193, 413
Fnu4HI	GCNGC	2 cut(s)	129, 132
FokI	GGATG	2 cut(s)	168, 259
Fsp4HI	GCNGC	2 cut(s)	129, 132
FspBI	CTAG	2 cut(s)	6, 488
GluI	GCNGC	2 cut(s)	129, 132
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	2 cut(s)	185, 224
Hin1II	CATG	2 cut(s)	197, 417
HinfI	GANTC	1 cut(s)	473
HpaII	CCGG	2 cut(s)	185, 224
HphI	GGTGA	2 cut(s)	28, 97
Hpy188I	TCNGA	3 cut(s)	305, 402, 433
Hpy188III	TCNNGA	3 cut(s)	48, 185, 326
HpyAV	CCTTC	5 cut(s)	70, 92, 237, 358, 388
HpyCH4III	ACNGT	1 cut(s)	146
HpyF3I	CTNAG	3 cut(s)	159, 165, 495
Hsp92II	CATG	2 cut(s)	197, 417
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	102, 261, 300, 397
LpnPI	CCDG	5 cut(s)	177, 198, 237, 242, 269
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	6, 488
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	4 cut(s)	104, 263, 302, 399
MboI	GATC	4 cut(s)	102, 261, 300, 397
MboII	GAAGA	5 cut(s)	21, 85, 103, 163, 256
MflI	RGATCY	2 cut(s)	261, 397
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	2 cut(s)	160, 419
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	1 cut(s)	123
MspI	CCGG	2 cut(s)	185, 224
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
NdeII	GATC	4 cut(s)	102, 261, 300, 397
NlaIII	CATG	2 cut(s)	197, 417
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	417
NspV	TTCGAA	2 cut(s)	153, 214
PciI	ACATGT	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	130, 133
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PscI	ACATGT	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspPI	GGNCC	2 cut(s)	79, 253
PsuI	RGATCY	2 cut(s)	261, 397
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	129, 132
Sau3AI	GATC	4 cut(s)	102, 261, 300, 397
Sau96I	GGNCC	2 cut(s)	79, 253
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	6 cut(s)	18, 160, 171, 212, 387, 411
SfcI	CTRYAG	2 cut(s)	142, 477
SfuI	TTCGAA	2 cut(s)	153, 214
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	6, 488
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	153, 214, 354
TasI	AATT	1 cut(s)	336
TauI	GCSGC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	110, 210
VpaK11BI	GGWCC	1 cut(s)	253
XceI	RCATGY	1 cut(s)	417
XspI	CTAG	2 cut(s)	6, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.