Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

43615998 .. 43616687

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G533700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCTAGAAAGAAGGTGAAACTGACTTATATCAGTAATGACTCAGCTAGAAAAGCAACATTCAAGAAAAGGAAGAAGGGTCTGATGAAGAAGGTGAGCGAACTCAGCACCCTTTGTGATGTTGAGGCATGTGCTATTATTTATAGCCCATATGATACTCAACCTGAGATTTGGCCATCCCCTCTGGGAGTGCAACGCGTTCTTGCAAAATTCAAGACCATGCCGGAGATGGAGCAGAGCAAAAAGATGGTGAATCAAGAGAGTTTTTTGCGGCAAAGGATTGAGAAAGCCAAGGAGCAGCTCAAGAAACAAAGGAAGGACAACAGGGAGAAGGAGATGACACGAGTGATGTTCCAGAGTCTCACTGGGAAGCCCCTCCAGGGTTTGAGCATGATCGATCTCAACGACCTCGGGTGGCTCATCGACCAGAACCTCAAGGAGATTTACAACAAGATTAAGAATCTGAATGAGGAGGCTGAGAAGAAACAAGTCCAACTGGAACCAACAGGATTGCCAGTGCATGCAGCAGCAGCAGATCAAGGAATAATGGAGAGGCAACCATGGTTCACAGACATGATGAACCCTCAAGAACAGCACATGGGGCTTGGTGCTGGGGAAGAGATGATGCTGCCATTTGGAGATCAAAACCACATTAATGCCATTTGGTCTAATAATGCCTTTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

230

Amino Acids

26.46

Weight (kDa)

9.27

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	198
AciI	CCGC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	64, 214
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	47, 301
AluI	AGCT	2 cut(s)	47, 301
Alw26I	GTCTC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	5 cut(s)	298, 524, 527, 530, 628
ApoI	RAATTY	1 cut(s)	209
AseI	ATTAAT	1 cut(s)	654
AsuHPI	GGTGA	3 cut(s)	28, 106, 262
AvaI	CYCGRG	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	175
BauI	CACGAG	1 cut(s)	342
BbvI	GCAGC	5 cut(s)	310, 536, 539, 542, 615
BccI	CCATC	3 cut(s)	184, 223, 241
BciT130I	CCWGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	6, 48
BisI	GCNGC	6 cut(s)	272, 299, 525, 528, 531, 629
BlsI	GCNGC	6 cut(s)	273, 300, 526, 529, 532, 630
Bme1390I	CCNGG	1 cut(s)	380
BmeT110I	CYCGRG	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	1 cut(s)	380
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	3 cut(s)	287, 419, 570
Bsa29I	ATCGAT	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	291, 379, 409, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	370, 501, 515
BseBI	CCWGG	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	4 cut(s)	291, 379, 409, 560
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	4 cut(s)	57, 118, 156, 468
BseNI	ACTGG	3 cut(s)	370, 501, 515
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	5 cut(s)	310, 536, 539, 542, 615
BseYI	CCCAGC	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	410
Bsp143I	GATC	4 cut(s)	393, 397, 535, 640
Bsp19I	CCATGG	1 cut(s)	560
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	4 cut(s)	56, 117, 157, 469
BspDI	ATCGAT	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	370, 501, 515
BssECI	CCNNGG	4 cut(s)	291, 379, 409, 560
BssMI	GATC	4 cut(s)	393, 397, 535, 640
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	291, 560
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	4 cut(s)	43, 104, 165, 477
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	176
BstFNI	CGCG	1 cut(s)	198
BstKTI	GATC	4 cut(s)	396, 400, 538, 643
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	393, 397, 535, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 105, 530, 601
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	2 cut(s)	132, 524
BstSCI	CCNGG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	310, 536, 539, 542, 615
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	363, 522
Cac8I	GCNNGC	1 cut(s)	522
ClaI	ATCGAT	1 cut(s)	396
CviAII	CATG	7 cut(s)	129, 220, 391, 521, 561, 574, 598
CviJI	RGCY	9 cut(s)	47, 147, 175, 290, 301, 373, 418, 476, 604
CviKI_1	RGCY	9 cut(s)	47, 147, 175, 290, 301, 373, 418, 476, 604
DdeI	CTNAG	4 cut(s)	43, 104, 165, 477
DpnI	GATC	4 cut(s)	395, 399, 537, 642
DpnII	GATC	4 cut(s)	393, 397, 535, 640
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco130I	CCWWGG	2 cut(s)	291, 560
Eco88I	CYCGRG	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	291, 560
ErhI	CCWWGG	2 cut(s)	291, 560
FaeI	CATG	7 cut(s)	132, 223, 394, 524, 564, 577, 601
FatI	CATG	7 cut(s)	128, 219, 390, 520, 560, 573, 597
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	6 cut(s)	272, 299, 525, 528, 531, 629
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	6 cut(s)	272, 299, 525, 528, 531, 629
FspBI	CTAG	2 cut(s)	6, 48
GluI	GCNGC	6 cut(s)	272, 299, 525, 528, 531, 629
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	7 cut(s)	132, 223, 394, 524, 564, 577, 601
HinfI	GANTC	4 cut(s)	41, 253, 358, 460
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	3 cut(s)	28, 106, 262
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	2 cut(s)	84, 465
Hpy188III	TCNNGA	7 cut(s)	6, 64, 214, 257, 304, 355, 587
Hpy8I	GTNNAC	1 cut(s)	567
HpyAV	CCTTC	5 cut(s)	7, 70, 85, 310, 325
HpyCH4V	TGCA	4 cut(s)	193, 206, 520, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 105, 530, 601
HpyF3I	CTNAG	4 cut(s)	43, 104, 165, 477
Hsp92II	CATG	7 cut(s)	132, 223, 394, 524, 564, 577, 601
Kzo9I	GATC	4 cut(s)	393, 397, 535, 640
LmnI	GCTCC	2 cut(s)	232, 295
Lsp1109I	GCAGC	5 cut(s)	310, 536, 539, 542, 615
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	2 cut(s)	6, 48
MalI	GATC	4 cut(s)	395, 399, 537, 642
MboI	GATC	4 cut(s)	393, 397, 535, 640
MboII	GAAGA	4 cut(s)	85, 100, 493, 629
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	1 cut(s)	209
MluI	ACGCGT	1 cut(s)	196
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	35, 367
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	9 cut(s)	118, 192, 386, 419, 443, 463, 466, 546, 594
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	2 cut(s)	456, 654
MslI	CAYNNNNRTG	2 cut(s)	572, 654
Msp20I	TGGCCA	1 cut(s)	175
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	53, 105, 530, 601
NcoI	CCATGG	1 cut(s)	560
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	4 cut(s)	393, 397, 535, 640
NlaIII	CATG	7 cut(s)	132, 223, 394, 524, 564, 577, 601
NlaIV	GGNNCC	1 cut(s)	501
NspI	RCATGY	2 cut(s)	132, 524
PaeI	GCATGC	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	253, 460
PkrI	GCNGC	6 cut(s)	273, 300, 526, 529, 532, 630
PleI	GAGTC	2 cut(s)	35, 366
PpsI	GAGTC	2 cut(s)	35, 366
PshBI	ATTAAT	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	501
RseI	CAYNNNNRTG	2 cut(s)	572, 654
SaqAI	TTAA	2 cut(s)	456, 654
SatI	GCNGC	6 cut(s)	272, 299, 525, 528, 531, 629
Sau3AI	GATC	4 cut(s)	393, 397, 535, 640
SchI	GAGTC	2 cut(s)	35, 367
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	7 cut(s)	18, 49, 96, 166, 303, 411, 435
SfaNI	GCATC	1 cut(s)	615
SmiMI	CAYNNNNRTG	2 cut(s)	572, 654
SmlI	CTYRAG	3 cut(s)	302, 434, 585
SmoI	CTYRAG	3 cut(s)	302, 434, 585
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	2 cut(s)	6, 48
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	291, 560
TaqI	TCGA	2 cut(s)	396, 423
TasI	AATT	1 cut(s)	209
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	253, 460
Tru1I	TTAA	2 cut(s)	456, 654
Tru9I	TTAA	2 cut(s)	456, 654
TscAI	CASTG	2 cut(s)	370, 522
TseI	GCWGC	5 cut(s)	298, 524, 527, 530, 628
TspDTI	ATGAA	2 cut(s)	101, 593
TspRI	CASTG	2 cut(s)	370, 522
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	5
XceI	RCATGY	2 cut(s)	132, 524
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 362
XspI	CTAG	2 cut(s)	6, 48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.