Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

42185653 .. 42186273

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTTAGAAGGAAGGTGAGACTGCACTACATTGCCAATGAGAGTTCCCGACGAACAACATTTAGAAAAAGAAAGAAGGGTCTTTTGAAGAAGGTGGGAGAGATAACCACTCTATGTGACATCAAGGCTGCGGTAATCATCTATAGCCCCTTTGATGGCGAGCCGGAGGTTTTCCCAAGTCATTCGGAAGTCCATGAACTGCTAACAAAGTTCCGAGATATGCCGCAAATGGACAAGACAATAAAGATGGTCAACCAGAAGACATTCTTACGACAACGAATCGACAAAGTCAGGGAGCAGATCAGAAAGATGAAACGAGACAACCGAGAAAAGGAGATCACTCAAGTCATGTTCGGTTGTTTGAAGGGGAGAACACTCTTTGACCTGGAAATGAAGGATCTGCAAGTCCTCAATTTTATCATCGAACGCAACCTCAAGGAGCTTGAAATAAAACAGCGGGCTACTGATGAGCAGAATGCTAATGAGCAGAAGCAGGAGGAAAACCAAGAGAACCAATTCAATCAGGTGCAAGCTGAATCGATTGAGGTGGAGCTCGGCTTGATGACGAGGAATGCATTTGGGGAGGGAACCAGCAAAGGCGTGCAGCAACAACACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

206

Amino Acids

24.36

Weight (kDa)

9.49

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 54	9.4e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	131, 224, 457
AclWI	GGATC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	155, 331
AgsI	TTSAA	4 cut(s)	88, 364, 446, 520
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	3 cut(s)	442, 533, 553
AluI	AGCT	3 cut(s)	442, 533, 553
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	2 cut(s)	13, 312
AlwI	GGATC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	128, 604
Asp700I	GAANNNNTTC	2 cut(s)	263, 515
AsuHPI	GGTGA	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	115, 616
BccI	CCATC	2 cut(s)	149, 241
BciT130I	CCWGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	13, 312
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	3 cut(s)	129, 224, 605
BlsI	GCNGC	3 cut(s)	130, 225, 606
Bme1390I	CCNGG	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	266
BpuEI	CTTGAG	2 cut(s)	327, 419
Bsa29I	ATCGAT	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 331
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	386
BseCI	ATCGAT	1 cut(s)	539
BseLI	CCNNNNNNNGG	2 cut(s)	155, 331
BseMI	GCAATG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	115, 616
BsgI	GTGCAG	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	155, 331
BsmAI	GTCTC	2 cut(s)	13, 312
BsmI	GAATGC	2 cut(s)	481, 577
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	300, 336, 397
BspACI	CCGC	3 cut(s)	131, 224, 457
BspDI	ATCGAT	1 cut(s)	539
BspLI	GGNNCC	1 cut(s)	589
BspPI	GGATC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	30
BssMI	GATC	3 cut(s)	300, 336, 397
Bst2UI	CCWGG	1 cut(s)	386
BstC8I	GCNNGC	4 cut(s)	161, 459, 531, 602
BstKTI	GATC	3 cut(s)	303, 339, 400
BstMAI	GTCTC	2 cut(s)	13, 312
BstMBI	GATC	3 cut(s)	300, 336, 397
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	115, 616
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	539
BsuTUI	ATCGAT	1 cut(s)	539
Cac8I	GCNNGC	4 cut(s)	161, 459, 531, 602
ClaI	ATCGAT	1 cut(s)	539
CviAII	CATG	2 cut(s)	194, 349
CviJI	RGCY	8 cut(s)	128, 147, 163, 442, 461, 533, 553, 558
CviKI_1	RGCY	8 cut(s)	128, 147, 163, 442, 461, 533, 553, 558
DpnI	GATC	3 cut(s)	302, 338, 399
DpnII	GATC	3 cut(s)	300, 336, 397
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	555
FaeI	CATG	2 cut(s)	197, 352
FaiI	YATR	5 cut(s)	115, 144, 195, 221, 350
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	2 cut(s)	193, 348
FauI	CCCGC	1 cut(s)	450
Fnu4HI	GCNGC	3 cut(s)	129, 224, 605
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	3 cut(s)	129, 224, 605
GluI	GCNGC	3 cut(s)	129, 224, 605
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	197, 352
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	279, 536
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	187, 215, 305
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	6 cut(s)	3, 7, 70, 85, 358, 388
HpyCH4V	TGCA	5 cut(s)	25, 403, 529, 575, 604
Hsp92II	CATG	2 cut(s)	197, 352
Kzo9I	GATC	3 cut(s)	300, 336, 397
LmnI	GCTCC	3 cut(s)	295, 439, 550
LpnPI	CCDG	8 cut(s)	177, 269, 277, 371, 398, 479, 509, 604
Lsp1109I	GCAGC	2 cut(s)	115, 616
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	302, 338, 399
MboI	GATC	3 cut(s)	300, 336, 397
MboII	GAAGA	2 cut(s)	100, 271
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	2 cut(s)	412, 515
MnlI	CCTC	7 cut(s)	160, 419, 443, 490, 538, 561, 577
Mph1103I	ATGCAT	1 cut(s)	577
MroXI	GAANNNNTTC	2 cut(s)	263, 515
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	386
Mva1269I	GAATGC	2 cut(s)	481, 577
MvaI	CCWGG	1 cut(s)	386
NdeII	GATC	3 cut(s)	300, 336, 397
NlaIII	CATG	2 cut(s)	197, 352
NlaIV	GGNNCC	1 cut(s)	589
NmeAIII	GCCGAG	1 cut(s)	534
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PctI	GAATGC	2 cut(s)	481, 577
PdmI	GAANNNNTTC	2 cut(s)	263, 515
PfeI	GAWTC	2 cut(s)	279, 536
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	130, 225, 606
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	555
SatI	GCNGC	3 cut(s)	129, 224, 605
Sau3AI	GATC	3 cut(s)	300, 336, 397
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	342, 434
SmoI	CTYRAG	2 cut(s)	342, 434
Sse9I	AATT	2 cut(s)	412, 515
SsiI	CCGC	3 cut(s)	131, 224, 457
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	384
TaqI	TCGA	3 cut(s)	282, 423, 539
TasI	AATT	2 cut(s)	412, 515
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	279, 536
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	128, 604
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	210, 326, 407
Tth111I	GACNNNGTC	1 cut(s)	287
XmnI	GAANNNNTTC	2 cut(s)	263, 515
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.