Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

27704350 .. 27705027

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1186300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGGGAGGAAGAAGGTGAAGCTAGCCTACATCATGAACGACGCAAGTCGAAAAACGTCATACAATAAAAGGAAGAACGGCTTCATTAAGAAGATGCATGAAATCAATATTCTTTGTGATGTTCCAGTATGTGGTATTATGTACAGTCCATATGAGTCTCAACCTGTTGTCTGGCCCAATCTTTTGGAAACGCAACGCCTCATCACCAAGTTTAGGAGCATGCCCGAGGCAGAGCGGAATAAGAAGATGGTGACCCATGAGATGTTTTTGAAGCAGAGGATTGAAAAGGAGCAGGAGAAGCTGAACAAGCTGAAGAAAGAGAACCGGGAGAAGCAAATTCGGATGCTCATGAACCAGTGTCTTACTGGAAGGCCCCTGATTGGCTTGGACTTAAACGATTTGAACGATATGGAGTGTATGATCAAGGAGTGCGTGACAGAGATTGTCGCACAGATCAAGAGCCGGAAGGAGGAGAATCTGGCGGAGAGGAACCAACCCCAAGTTGCACGTACACAAGTGCTAGCACCCTCAACTGATCAGAACATGCATGCAGCAATGGAAACACAAATGTTTGATCTAAACAACATGGACGCCATGCAGACGGCTCCATGGTTCGTAGGGGACGTGTCAAACCAACATTTCGGCTATGTTGATGATCAGATCCCGCCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

226

Amino Acids

26.25

Weight (kDa)

8.88

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 52	9e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	3 cut(s)	238, 485, 668
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	2 cut(s)	146, 514
AfiI	CCNNNNNNNGG	4 cut(s)	134, 216, 383, 472
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	3 cut(s)	274, 287, 406
AjiI	CACGTC	1 cut(s)	628
AluBI	AGCT	3 cut(s)	25, 304, 313
AluI	AGCT	3 cut(s)	25, 304, 313
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	176, 374
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	177, 375
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	3 cut(s)	31, 199, 265
AsuNHI	GCTAGC	2 cut(s)	25, 523
AvaI	CYCGRG	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	2 cut(s)	97, 621
BclI	TGATCA	3 cut(s)	423, 538, 658
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	26, 524
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	177, 375
BmiI	GGNNCC	3 cut(s)	377, 494, 609
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	87, 336
BmtI	GCTAGC	2 cut(s)	29, 527
BoxI	GACNNNNGTC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	512
BsaHI	GRCGYC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	228, 611
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 216, 383, 472
Bse1I	ACTGG	3 cut(s)	128, 358, 373
Bse3DI	GCAATG	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	228, 611
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	4 cut(s)	134, 216, 383, 472
BseMI	GCAATG	1 cut(s)	564
BseNI	ACTGG	3 cut(s)	128, 358, 373
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	566
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	2 cut(s)	178, 376
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	328, 466
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	4 cut(s)	134, 216, 383, 472
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	178, 376
BsoBI	CYCGRG	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	6 cut(s)	423, 456, 538, 577, 658, 663
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	3 cut(s)	238, 485, 668
BspANI	GGCC	2 cut(s)	178, 376
BspHI	TCATGA	2 cut(s)	36, 351
BspLI	GGNNCC	3 cut(s)	377, 494, 609
BspOI	GCTAGC	2 cut(s)	29, 527
BspPI	GGATC	1 cut(s)	658
BsrBI	CCGCTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	564
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	3 cut(s)	128, 358, 373
BssECI	CCNNGG	2 cut(s)	228, 611
BssMI	GATC	6 cut(s)	423, 456, 538, 577, 658, 663
BssNI	GRCGYC	1 cut(s)	594
BssT1I	CCWWGG	1 cut(s)	611
Bst4CI	ACNGT	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	594
BstAUI	TGTACA	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	4 cut(s)	27, 224, 525, 552
BstDSI	CCRYGG	1 cut(s)	611
BstEII	GGTNACC	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	6 cut(s)	426, 459, 541, 580, 661, 666
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	6 cut(s)	423, 456, 538, 577, 658, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 310
BstNSI	RCATGY	3 cut(s)	226, 550, 554
BstPAI	GACNNNNGTC	1 cut(s)	48
BstPI	GGTNACC	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	663
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	178, 376
BtgI	CCRYGG	1 cut(s)	611
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	4 cut(s)	27, 224, 525, 552
CciI	TCATGA	2 cut(s)	36, 351
Cfr13I	GGNCC	2 cut(s)	177, 375
CseI	GACGC	2 cut(s)	53, 602
Csp6I	GTAC	2 cut(s)	145, 513
CviQI	GTAC	2 cut(s)	145, 513
DpnI	GATC	6 cut(s)	425, 458, 540, 579, 660, 665
DpnII	GATC	6 cut(s)	423, 456, 538, 577, 658, 663
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	375
EcoO65I	GGTNACC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	2 cut(s)	102, 552
ErhI	CCWWGG	1 cut(s)	611
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	638
FauI	CCCGC	1 cut(s)	675
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	3 cut(s)	423, 538, 658
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	2 cut(s)	26, 524
GluI	GCNGC	1 cut(s)	555
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	178, 376
HapII	CCGG	2 cut(s)	328, 466
HgaI	GACGC	2 cut(s)	53, 602
Hin1I	GRCGYC	1 cut(s)	594
HinfI	GANTC	2 cut(s)	158, 478
HpaII	CCGG	2 cut(s)	328, 466
HphI	GGTGA	3 cut(s)	31, 199, 265
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	3 cut(s)	345, 543, 663
Hpy188III	TCNNGA	3 cut(s)	37, 352, 460
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	10, 366, 463
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	3 cut(s)	59, 511, 627
HpyCH4V	TGCA	5 cut(s)	100, 509, 550, 554, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 310
HpySE526I	ACGT	3 cut(s)	59, 511, 627
Hsp92I	GRCGYC	1 cut(s)	594
Ksp22I	TGATCA	3 cut(s)	423, 538, 658
Kzo9I	GATC	6 cut(s)	423, 456, 538, 577, 658, 663
LmnI	GCTCC	3 cut(s)	219, 292, 613
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	2 cut(s)	87, 336
MaeI	CTAG	2 cut(s)	26, 524
MaeII	ACGT	3 cut(s)	59, 511, 627
MaeIII	GTNAC	2 cut(s)	253, 436
MalI	GATC	6 cut(s)	425, 458, 540, 579, 660, 665
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	6 cut(s)	423, 456, 538, 577, 658, 663
MboII	GAAGA	5 cut(s)	25, 88, 106, 259, 328
MflI	RGATCY	1 cut(s)	663
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	7 cut(s)	3, 212, 223, 273, 466, 483, 541
Mph1103I	ATGCAT	2 cut(s)	102, 552
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	3 cut(s)	90, 395, 676
MspI	CCGG	2 cut(s)	328, 466
MspR9I	CCNGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	301, 310
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	611
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	6 cut(s)	423, 456, 538, 577, 658, 663
NheI	GCTAGC	2 cut(s)	25, 523
NlaIV	GGNNCC	3 cut(s)	377, 494, 609
NmuCI	GTSAC	2 cut(s)	253, 436
NsiI	ATGCAT	2 cut(s)	102, 552
NspI	RCATGY	3 cut(s)	226, 550, 554
PaeI	GCATGC	2 cut(s)	226, 554
PagI	TCATGA	2 cut(s)	36, 351
PcsI	WCGNNNNNNNCGW	2 cut(s)	405, 624
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	478
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	512
PshAI	GACNNNNGTC	1 cut(s)	48
PspEI	GGTNACC	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	377, 494, 609
PspPI	GGNCC	2 cut(s)	177, 375
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	2 cut(s)	146, 514
RsaNI	GTAC	2 cut(s)	145, 513
SaqAI	TTAA	3 cut(s)	90, 395, 676
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	6 cut(s)	423, 456, 538, 577, 658, 663
Sau96I	GGNCC	2 cut(s)	177, 375
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	8 cut(s)	21, 27, 62, 169, 306, 315, 514, 630
SfaNI	GCATC	2 cut(s)	87, 336
SphI	GCATGC	2 cut(s)	226, 554
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	3 cut(s)	238, 485, 668
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	26, 524
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	3 cut(s)	62, 514, 630
TaqI	TCGA	1 cut(s)	52
TasI	AATT	1 cut(s)	339
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	3 cut(s)	90, 395, 676
Tru9I	TTAA	3 cut(s)	90, 395, 676
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	2 cut(s)	253, 436
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	2 cut(s)	253, 436
TspDTI	ATGAA	4 cut(s)	53, 76, 117, 368
TspRI	CASTG	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	3 cut(s)	226, 550, 554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	2 cut(s)	26, 524
Zsp2I	ATGCAT	2 cut(s)	102, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.