Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

12520183 .. 12520818

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G092700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTAGGACAAAGGTGAAGCTTGCATGGATAGAGAACGATAGCGCTAGAAAGAAAAGGTTCCGAAGGAGGAAGGGAAGCTTGTTGAAGAAAGTTAGTGAAATAAGCACCTTATGTGATGTGGGTGCTTTCGCCATTGTCTATGCCCCAGACAGCGACGAGCCAGATGTGTGGCCTTCTCCCTCTGAGGTGAAGGAACTAATTGCAAAGTTCCAGAGCATCCCAGAAGCAGAACGGTCCAAGAAGATGACGGATCACGAGACTTACCTAAAGGAGACAACTGCCAAGCTAGAACAGCAATTGAGGAAGATCAAGAGGCAGAACTATGAGATGGAGATGAACGACATCATGCACGATCTTTACAAAGAGGAGAAAATGAAGGAAATCTCAAAAATTATGGAGCGTCTGGAGAAGGATCTTCCACCAGCTGATGTCTCTTCTCAGGTGGGTCGTGATCATGAGAATGTTGCTGGAATGAGCAACAACAATGCAGCAGGAAGAAAAATTGGAGGCATCAGACTTATGGGTTTTGATATTGGAAGCAGCATCATTGGTGATAATGGAGGTGGTGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

193

Amino Acids

21.77

Weight (kDa)

7.77

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	261, 423
AfeI	AGCGCT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	4 cut(s)	22, 81, 289, 428
AluI	AGCT	4 cut(s)	22, 81, 289, 428
Alw26I	GTCTC	3 cut(s)	254, 269, 439
AlwI	GGATC	2 cut(s)	261, 423
Aor51HI	AGCGCT	1 cut(s)	46
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	491, 543
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	3 cut(s)	28, 202, 566
AvaII	GGWCC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	503, 555
BccI	CCATC	1 cut(s)	325
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	254, 269, 439
BfaI	CTAG	3 cut(s)	6, 48, 290
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	2 cut(s)	492, 544
BlsI	GCNGC	2 cut(s)	493, 545
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	3 cut(s)	228, 522, 555
BpmI	CTGGAG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	177, 455
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	503, 555
BshFI	GGCC	1 cut(s)	175
BsmAI	GTCTC	3 cut(s)	254, 269, 439
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	253, 309, 355, 415, 454
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	2 cut(s)	178, 454
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	261, 423
BssMI	GATC	5 cut(s)	253, 309, 355, 415, 454
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	186, 441
BstF5I	GGATG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	5 cut(s)	256, 312, 358, 418, 457
BstMAI	GTCTC	3 cut(s)	254, 269, 439
BstMBI	GATC	5 cut(s)	253, 309, 355, 415, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	503, 555
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	237
CseI	GACGC	1 cut(s)	392
CviAII	CATG	3 cut(s)	27, 349, 458
CviJI	RGCY	7 cut(s)	5, 22, 81, 163, 175, 289, 428
CviKI_1	RGCY	7 cut(s)	5, 22, 81, 163, 175, 289, 428
DdeI	CTNAG	2 cut(s)	186, 441
DpnI	GATC	5 cut(s)	255, 311, 357, 417, 456
DpnII	GATC	5 cut(s)	253, 309, 355, 415, 454
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	46
FaeI	CATG	3 cut(s)	30, 352, 461
FaiI	YATR	8 cut(s)	28, 115, 144, 327, 350, 398, 459, 524
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	3 cut(s)	26, 348, 457
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	492, 544
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	492, 544
FspBI	CTAG	3 cut(s)	6, 48, 290
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	492, 544
GsuI	CTGGAG	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	30, 352, 461
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HindIII	AAGCTT	2 cut(s)	20, 79
HphI	GGTGA	3 cut(s)	28, 202, 566
Hpy188I	TCNGA	3 cut(s)	65, 187, 518
Hpy188III	TCNNGA	6 cut(s)	214, 257, 313, 407, 452, 458
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	6 cut(s)	60, 67, 186, 187, 373, 406
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	26, 206, 352, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	2 cut(s)	186, 441
Hsp92II	CATG	3 cut(s)	30, 352, 461
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	5 cut(s)	253, 309, 355, 415, 454
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	9 cut(s)	162, 177, 227, 237, 392, 428, 438, 456, 480
Lsp1109I	GCAGC	2 cut(s)	503, 555
LweI	GCATC	3 cut(s)	228, 522, 555
MaeI	CTAG	3 cut(s)	6, 48, 290
MalI	GATC	5 cut(s)	255, 311, 357, 417, 456
MboI	GATC	5 cut(s)	253, 309, 355, 415, 454
MboII	GAAGA	6 cut(s)	100, 256, 319, 410, 429, 510
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	4 cut(s)	201, 299, 393, 504
MnlI	CCTC	9 cut(s)	63, 181, 193, 297, 309, 361, 503, 557, 565
MroXI	GAANNNNTTC	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	5 cut(s)	253, 309, 355, 415, 454
NlaIII	CATG	3 cut(s)	30, 352, 461
NlaIV	GGNNCC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	493, 545
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	462
SatI	GCNGC	2 cut(s)	492, 544
Sau3AI	GATC	5 cut(s)	253, 309, 355, 415, 454
Sau96I	GGNCC	1 cut(s)	237
SfaNI	GCATC	3 cut(s)	228, 522, 555
SinI	GGWCC	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	4 cut(s)	201, 299, 393, 504
SspMI	CTAG	3 cut(s)	6, 48, 290
TaaI	ACNGT	1 cut(s)	237
TasI	AATT	4 cut(s)	201, 299, 393, 504
TseI	GCWGC	2 cut(s)	491, 543
TspDTI	ATGAA	2 cut(s)	353, 392
TspGWI	ACGGA	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	3 cut(s)	6, 48, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.