Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

1676770 .. 1677483

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1013200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCCCGAAAGAAGGTGAAGCTTGCCTACATCCAAAACCACACGACTCGAAAACTAACATTCAAAAAAAGAAAGAAGGGTTTTATGAAGAAGATGAGCGAAATCACTACCCTTTGTGATGTTGAGGCATGTGCTATCGTTTATGGACAGAACGATACTCAGCCTGAGGTTTGGCCATCCCCTTCTGGAGTACAAGGCACTTACGCGAAGTTCAGGACAATGCCCTCAATGGAGCAAACCAAAAAGCAGCTGAACATGGAGACTTTTCTGAGGCAGCGGATTGACAAGGCAAAGGACCAGCTGAGGAAACAGAAGAAGGAGAACCGGGAGAAAGAAATGTCAATCCTGATGAGCCAGTGTCTAACAGGGAGGTCCCTACACGATCTGAGCATGGGGGATTTGACTGACTTAGGGTGGGTGGTTGACCACAAAGTGGAGGATATCAATAGAAAGGTGAAGAAAGTGCATGACGAGTTGGCTTGGAACGGGAGCAATCAAGTCCAAGTAGTACCAACACAGCCGCCACCACCAGCGATCAGTGTTGGAACGATGAACATGCAACAAACTCAGTCTCAAGCTGCACCGATGGAGATGATGACCCTGCAAGACCAGCAGCCGCAACAGCAGATGGGAGCAATTGGAGCAAACACCGGGGACGACTTTCTGCCCTTTGGGGACCAGAACCACCAATCTCTGTGGTCTAATATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

238

Amino Acids

27.04

Weight (kDa)

9.36

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 52	2.4e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccII	CGCG	1 cut(s)	206
AciI	CCGC	3 cut(s)	277, 521, 617
AcoI	YGGCCR	1 cut(s)	173
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	2 cut(s)	192, 510
AfiI	CCNNNNNNNGG	2 cut(s)	13, 433
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	4 cut(s)	22, 250, 301, 578
AluI	AGCT	4 cut(s)	22, 250, 301, 578
Alw26I	GTCTC	2 cut(s)	254, 576
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	4 cut(s)	247, 274, 578, 613
AspS9I	GGNCC	3 cut(s)	295, 372, 676
AsuC2I	CCSGG	2 cut(s)	326, 652
AsuHPI	GGTGA	2 cut(s)	28, 466
AvaII	GGWCC	3 cut(s)	295, 372, 676
AxyI	CCTNAGG	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	259, 286, 565, 625
BccI	CCATC	3 cut(s)	184, 580, 622
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BcnI	CCSGG	2 cut(s)	326, 652
BcoDI	GTCTC	2 cut(s)	254, 576
BisI	GCNGC	6 cut(s)	248, 275, 521, 579, 614, 617
BlsI	GCNGC	6 cut(s)	249, 276, 522, 580, 615, 618
Bme1390I	CCNGG	2 cut(s)	326, 652
Bme18I	GGWCC	3 cut(s)	295, 372, 676
BmgT120I	GGNCC	3 cut(s)	295, 372, 676
BmiI	GGNNCC	2 cut(s)	374, 677
BmrFI	CCNGG	2 cut(s)	326, 652
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	558
BpuMI	CCSGG	2 cut(s)	326, 652
BsaJI	CCNNGG	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 433
Bse1I	ACTGG	1 cut(s)	355
Bse21I	CCTNAGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	2 cut(s)	30, 176
BseLI	CCNNNNNNNGG	2 cut(s)	13, 433
BseMII	CTCAG	6 cut(s)	156, 173, 260, 293, 377, 581
BseNI	ACTGG	1 cut(s)	355
BseXI	GCAGC	4 cut(s)	259, 286, 565, 625
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	325, 651
BslFI	GGGAC	3 cut(s)	358, 668, 689
BslI	CCNNNNNNNGG	2 cut(s)	13, 433
BsmAI	GTCTC	2 cut(s)	254, 576
BsmFI	GGGAC	3 cut(s)	358, 668, 689
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	382, 534
BspACI	CCGC	3 cut(s)	277, 521, 617
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	6 cut(s)	157, 172, 261, 294, 378, 580
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	374, 677
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	2 cut(s)	382, 534
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	7 cut(s)	159, 165, 269, 302, 386, 409, 567
BstF5I	GGATG	2 cut(s)	30, 176
BstFNI	CGCG	1 cut(s)	206
BstKTI	GATC	2 cut(s)	385, 537
BstMAI	GTCTC	2 cut(s)	254, 576
BstMBI	GATC	2 cut(s)	382, 534
BstMWI	GCNNNNNNNGC	3 cut(s)	610, 622, 641
BstNSI	RCATGY	2 cut(s)	132, 559
BstSCI	CCNGG	2 cut(s)	324, 650
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	4 cut(s)	259, 286, 565, 625
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	30, 176
BtsIMutI	CAGTG	2 cut(s)	362, 544
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	295, 372, 676
Csp6I	GTAC	2 cut(s)	191, 509
CspCI	CAANNNNNGTGG	2 cut(s)	677, 712
CviAII	CATG	5 cut(s)	129, 256, 391, 467, 556
CviQI	GTAC	2 cut(s)	191, 509
DdeI	CTNAG	7 cut(s)	159, 165, 269, 302, 386, 409, 567
DpnI	GATC	2 cut(s)	384, 536
DpnII	GATC	2 cut(s)	382, 534
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	3 cut(s)	295, 372, 676
Eco81I	CCTNAGG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	5 cut(s)	132, 259, 394, 470, 559
FaiI	YATR	8 cut(s)	86, 130, 144, 257, 392, 468, 557, 712
FaqI	GGGAC	3 cut(s)	358, 668, 689
FatI	CATG	5 cut(s)	128, 255, 390, 466, 555
Fnu4HI	GCNGC	6 cut(s)	248, 275, 521, 579, 614, 617
FokI	GGATG	2 cut(s)	17, 163
Fsp4HI	GCNGC	6 cut(s)	248, 275, 521, 579, 614, 617
GluI	GCNGC	6 cut(s)	248, 275, 521, 579, 614, 617
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	2 cut(s)	325, 651
Hin1II	CATG	5 cut(s)	132, 259, 394, 470, 559
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	2 cut(s)	325, 651
HphI	GGTGA	2 cut(s)	28, 466
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	2 cut(s)	270, 387
Hpy188III	TCNNGA	4 cut(s)	6, 186, 214, 346
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	4 cut(s)	7, 70, 192, 310
HpyCH4V	TGCA	4 cut(s)	466, 559, 581, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	610, 622, 641
HpyF3I	CTNAG	7 cut(s)	159, 165, 269, 302, 386, 409, 567
Hsp92II	CATG	5 cut(s)	132, 259, 394, 470, 559
Kzo9I	GATC	2 cut(s)	382, 534
LmnI	GCTCC	4 cut(s)	232, 489, 632, 641
Lsp1109I	GCAGC	4 cut(s)	259, 286, 565, 625
MalI	GATC	2 cut(s)	384, 536
MboI	GATC	2 cut(s)	382, 534
MboII	GAAGA	4 cut(s)	100, 103, 325, 469
MfeI	CAATTG	1 cut(s)	636
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	1 cut(s)	636
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	7 cut(s)	118, 160, 235, 264, 297, 363, 430
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	3 cut(s)	250, 277, 301
MspI	CCGG	2 cut(s)	325, 651
MspR9I	CCNGG	2 cut(s)	326, 652
MunI	CAATTG	1 cut(s)	636
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	610, 622, 641
NciI	CCSGG	2 cut(s)	326, 652
NdeII	GATC	2 cut(s)	382, 534
NlaIII	CATG	5 cut(s)	132, 259, 394, 470, 559
NlaIV	GGNNCC	2 cut(s)	374, 677
NspI	RCATGY	2 cut(s)	132, 559
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	249, 276, 522, 580, 615, 618
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	374, 677
PspPI	GGNCC	3 cut(s)	295, 372, 676
PspPPI	RGGWCCY	1 cut(s)	372
PvuII	CAGCTG	2 cut(s)	250, 301
RsaI	GTAC	2 cut(s)	192, 510
RsaNI	GTAC	2 cut(s)	191, 509
SatI	GCNGC	6 cut(s)	248, 275, 521, 579, 614, 617
Sau3AI	GATC	2 cut(s)	382, 534
Sau96I	GGNCC	3 cut(s)	295, 372, 676
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	326, 652
SetI	ASST	8 cut(s)	18, 24, 171, 252, 303, 374, 456, 580
SinI	GGWCC	3 cut(s)	295, 372, 676
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	1 cut(s)	636
SsiI	CCGC	3 cut(s)	277, 521, 617
SspI	AATATT	1 cut(s)	706
StyD4I	CCNGG	2 cut(s)	324, 650
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	636
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	2 cut(s)	523, 619
TscAI	CASTG	2 cut(s)	362, 544
TseI	GCWGC	4 cut(s)	247, 274, 578, 613
TspDTI	ATGAA	2 cut(s)	101, 566
TspRI	CASTG	2 cut(s)	362, 544
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	3 cut(s)	295, 372, 676
XceI	RCATGY	2 cut(s)	132, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.