Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

57267319 .. 57268143

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG373900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTAGAAGAAAGGTGAGACTGCATTACATAGCCAATGTGAGTTCACGAAAAAACACATTTAGGAAAAGGAAGAAGGGTCTTCTGAAGAAGATGAAAGAGATCACCACTCTTTGTGACATTAAGGCTGCGGCGATCATCTACAGTCCCTTTGAAACCGAGCCTGAGGTCTTCCCAAATCATCCGGAAGCCCACGAAATGCTGACGATGTTTCGAAATATGCCGGAGATGGACAAGACAAGAAGGATGATGGACCAGGAGATCTTCTTACGACAACGAATAGACAAAACCCGAGAGCAGATAAGAAAGCAGAAAAGAGACAATCGGGAGAAGCAGATTACTCAAGTTATGTTCGACTGCTTGAAGGGGGAAACCATCTCTAACCTTGAAAAGAAGGATCTGAATGACCTCACTTTTATAATCGAACAGAACCTCAGGGAGTTAGATATCAAAGAGCAGGCTACGGAGGAGCACAAGCAGGAGGAGAACCAGCTTAACCAGATGCCAGGTGCGCCAACTGCTGTGGAGCTTGACTTGACGAGGAATGCATTTGGAGAGGGAACAAGCAGAGGCGTGGGGCAGCAGCAGCACCCGGCCACGATGGATGCACAGAGTATGGAGCAGATGCATTACCAAATGATGCAGGTTGCGGCGCAGAGGCAACCTCAACAGATGCTCCAACAGCGACCCTGGTTCGTGGACATCATGAATCCACCATCGCCGCAGACAATGGACTTCCTGCAGCCGCTTCCACCAGGAGCGTTCGGAGACATCAGCAGCATAAATGCTACATGGCCAAATAATTCGTCATTCCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

274

Amino Acids

32.11

Weight (kDa)

9.0

Isoelectric Point (pI)

64.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	3.1e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	634
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	4 cut(s)	131, 650, 722, 746
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	2 cut(s)	594, 794
AcuI	CTGAAG	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	155, 364, 389
AjnI	CCWGG	4 cut(s)	255, 505, 689, 754
AluBI	AGCT	2 cut(s)	493, 529
AluI	AGCT	2 cut(s)	493, 529
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	3 cut(s)	13, 312, 762
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	594, 794
ApeKI	GCWGC	6 cut(s)	128, 580, 583, 586, 742, 777
ArsI	GACNNNNNNTTYG	2 cut(s)	791, 823
AspLEI	GCGC	2 cut(s)	514, 655
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	28, 97
AsuII	TTCGAA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	2 cut(s)	165, 434
BalI	TGGCCA	1 cut(s)	796
BbsI	GAAGAC	2 cut(s)	74, 163
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	6 cut(s)	115, 592, 595, 598, 754, 789
BccI	CCATC	5 cut(s)	223, 244, 383, 595, 724
BciT130I	CCWGG	4 cut(s)	257, 507, 691, 756
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	3 cut(s)	13, 312, 762
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	2 cut(s)	142, 740
BfuAI	ACCTGC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	261
Bme1390I	CCNGG	5 cut(s)	257, 507, 593, 691, 756
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	253
BmrFI	CCNGG	5 cut(s)	257, 507, 593, 691, 756
BmsI	GCATC	5 cut(s)	492, 595, 615, 630, 663
BpiI	GAAGAC	2 cut(s)	74, 163
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	1 cut(s)	689
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bse21I	CCTNAGG	2 cut(s)	165, 434
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	4 cut(s)	257, 507, 691, 756
BseDI	CCNNGG	1 cut(s)	689
BseGI	GGATG	3 cut(s)	181, 252, 610
BseMII	CTCAG	2 cut(s)	156, 448
BseRI	GAGGAG	2 cut(s)	482, 497
BseXI	GCAGC	6 cut(s)	115, 592, 595, 598, 754, 789
BshFI	GGCC	2 cut(s)	596, 796
BsiHKAI	GWGCWC	1 cut(s)	474
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	185, 224, 593
BslFI	GGGAC	1 cut(s)	132
BsmAI	GTCTC	3 cut(s)	13, 312, 762
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	596, 796
BsoBI	CYCGRG	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	102, 135, 261, 397
BspACI	CCGC	4 cut(s)	131, 650, 722, 746
BspANI	GGCC	2 cut(s)	596, 796
BspCNI	CTCAG	2 cut(s)	157, 447
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	705
BspMAI	CTGCAG	1 cut(s)	744
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	4 cut(s)	102, 135, 261, 397
Bst2UI	CCWGG	4 cut(s)	257, 507, 691, 756
Bst4CI	ACNGT	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	165, 434
BstF5I	GGATG	3 cut(s)	181, 252, 610
BstHHI	GCGC	2 cut(s)	514, 655
BstKTI	GATC	4 cut(s)	105, 138, 264, 400
BstMAI	GTCTC	3 cut(s)	13, 312, 762
BstMBI	GATC	4 cut(s)	102, 135, 261, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	511, 518, 586, 682
BstNI	CCWGG	4 cut(s)	257, 507, 691, 756
BstSCI	CCNGG	5 cut(s)	255, 505, 591, 689, 754
BstSFI	CTRYAG	2 cut(s)	142, 740
BstV1I	GCAGC	6 cut(s)	115, 592, 595, 598, 754, 789
BstV2I	GAAGAC	2 cut(s)	74, 163
BstX2I	RGATCY	2 cut(s)	261, 397
BstYI	RGATCY	2 cut(s)	261, 397
Bsu36I	CCTNAGG	2 cut(s)	165, 434
BsuRI	GGCC	2 cut(s)	596, 796
BtgZI	GCGATG	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	181, 252, 610
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	2 cut(s)	514, 655
Cfr13I	GGNCC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	2 cut(s)	706, 792
DdeI	CTNAG	2 cut(s)	165, 434
DpnI	GATC	4 cut(s)	104, 137, 263, 399
DpnII	GATC	4 cut(s)	102, 135, 261, 397
EaeI	YGGCCR	2 cut(s)	594, 794
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	2 cut(s)	165, 434
Eco88I	CYCGRG	1 cut(s)	291
EcoRII	CCWGG	4 cut(s)	255, 505, 689, 754
EcoRV	GATATC	1 cut(s)	448
EcoT22I	ATGCAT	2 cut(s)	550, 630
FaeI	CATG	2 cut(s)	709, 795
FaiI	YATR	8 cut(s)	32, 221, 350, 419, 617, 707, 782, 793
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	705, 791
FokI	GGATG	3 cut(s)	168, 259, 617
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	513, 654
HaeIII	GGCC	2 cut(s)	596, 796
HapII	CCGG	3 cut(s)	185, 224, 593
HhaI	GCGC	2 cut(s)	514, 655
Hin1II	CATG	2 cut(s)	709, 795
Hin6I	GCGC	2 cut(s)	512, 653
HinP1I	GCGC	2 cut(s)	512, 653
HinfI	GANTC	1 cut(s)	709
HpaII	CCGG	3 cut(s)	185, 224, 593
HphI	GGTGA	2 cut(s)	28, 97
Hpy166II	GTNNAC	2 cut(s)	47, 700
Hpy188I	TCNGA	3 cut(s)	87, 402, 767
Hpy188III	TCNNGA	4 cut(s)	48, 185, 326, 706
Hpy8I	GTNNAC	2 cut(s)	47, 700
HpyAV	CCTTC	4 cut(s)	70, 237, 358, 388
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	6 cut(s)	25, 548, 608, 628, 643, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	511, 518, 586, 682
HpyF3I	CTNAG	2 cut(s)	165, 434
Hsp92II	CATG	2 cut(s)	709, 795
HspAI	GCGC	2 cut(s)	512, 653
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	102, 135, 261, 397
LmnI	GCTCC	5 cut(s)	469, 526, 619, 681, 758
Lsp1109I	GCAGC	6 cut(s)	115, 592, 595, 598, 754, 789
LweI	GCATC	5 cut(s)	492, 595, 615, 630, 663
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	4 cut(s)	104, 137, 263, 399
MboI	GATC	4 cut(s)	102, 135, 261, 397
MboII	GAAGA	7 cut(s)	21, 74, 85, 100, 103, 163, 256
MflI	RGATCY	2 cut(s)	261, 397
MhlI	GDGCHC	1 cut(s)	474
MlsI	TGGCCA	1 cut(s)	796
MluCI	AATT	1 cut(s)	802
MluNI	TGGCCA	1 cut(s)	796
MmeI	TCCRAC	1 cut(s)	703
Mox20I	TGGCCA	1 cut(s)	796
Mph1103I	ATGCAT	2 cut(s)	550, 630
MroI	TCCGGA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	796
MseI	TTAA	2 cut(s)	123, 495
Msp20I	TGGCCA	1 cut(s)	796
MspI	CCGG	3 cut(s)	185, 224, 593
MspR9I	CCNGG	5 cut(s)	257, 507, 593, 691, 756
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	4 cut(s)	257, 507, 691, 756
MwoI	GCNNNNNNNGC	4 cut(s)	511, 518, 586, 682
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	4 cut(s)	102, 135, 261, 397
NlaIII	CATG	2 cut(s)	709, 795
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	2 cut(s)	550, 630
NspV	TTCGAA	1 cut(s)	214
PagI	TCATGA	1 cut(s)	705
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	4 cut(s)	255, 505, 689, 754
PspGI	CCWGG	4 cut(s)	255, 505, 689, 754
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	2 cut(s)	261, 397
SaqAI	TTAA	2 cut(s)	123, 495
Sau3AI	GATC	4 cut(s)	102, 135, 261, 397
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	5 cut(s)	257, 507, 593, 691, 756
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	5 cut(s)	492, 595, 615, 630, 663
SfcI	CTRYAG	2 cut(s)	142, 740
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	802
SsiI	CCGC	4 cut(s)	131, 650, 722, 746
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	5 cut(s)	255, 505, 591, 689, 754
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	214, 354, 423
TasI	AATT	1 cut(s)	802
TauI	GCSGC	4 cut(s)	134, 653, 724, 748
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	2 cut(s)	123, 495
Tru9I	TTAA	2 cut(s)	123, 495
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	6 cut(s)	128, 580, 583, 586, 742, 777
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	110, 722
TspGWI	ACGGA	2 cut(s)	479, 803
VpaK11BI	GGWCC	1 cut(s)	253
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	2 cut(s)	550, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.