Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

29964752 .. 29965264

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTAGAAAGAAAGTGAGAATGGCCTACATCACCAACAATTCAGCTAGGAAAACTACATTCAAGAAAAGGAAAATGGGTATGATGAAGAAGTTGAGCGAATTGAGCACTCTCTGTGGAGTTGATGCATGTGCTGTTATTTACAGCCCATTTGATTCTCAAGCTGAGGTTTGGCCTTCTCCATCTAGGGTAAAAAATGTTCTTGAGAAATTCAAGAACATGCCTATGATAGAGAAGAGCCAAAAGATGTTGAACCAAGAAAGCTTTTTGAGGGGGATGATATCTAAAACGAATGAGCAATTGAAGAAAGTAAGAAAGCAAAATCATGAGAAGGAATTGAGACATACCATGTTCCAAAGTCTCACCACAGGAATTCCTCAATTCCAGAATCTGAATTTGATGGATATGGGTGATCTTGAGCAGCTTATCAACCAGAAATTGGATAGTAGAATAGAGAATCACGGTAAGGAGGTGATCGAAAATGAGAACCAAAATGTCCAAGTTGCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

170

Amino Acids

19.75

Weight (kDa)

9.78

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	9.7e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	439
AcsI	RAATTY	3 cut(s)	209, 372, 394
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	64, 214, 253, 304
AluBI	AGCT	4 cut(s)	47, 164, 264, 424
AluI	AGCT	4 cut(s)	47, 164, 264, 424
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	334, 365
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	24, 173
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	3 cut(s)	209, 372, 394
AsuHPI	GGTGA	4 cut(s)	25, 355, 422, 484
Bbv12I	GWGCWC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	190, 394
BcoDI	GTCTC	2 cut(s)	334, 365
BfaI	CTAG	3 cut(s)	6, 48, 186
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmsI	GCATC	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	3 cut(s)	144, 224, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	433
BshFI	GGCC	2 cut(s)	26, 175
BsiHKAI	GWGCWC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	334, 365
BsnI	GGCC	2 cut(s)	26, 175
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	412, 474
BspANI	GGCC	2 cut(s)	26, 175
BspCNI	CTCAG	1 cut(s)	157
BspHI	TCATGA	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	230
BssMI	GATC	2 cut(s)	412, 474
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	2 cut(s)	415, 477
BstMAI	GTCTC	2 cut(s)	334, 365
BstMBI	GATC	2 cut(s)	412, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	2 cut(s)	132, 223
BstV1I	GCAGC	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	26, 175
BtsCI	GGATG	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	391
CciI	TCATGA	1 cut(s)	325
CviAII	CATG	4 cut(s)	129, 220, 326, 349
CviJI	RGCY	9 cut(s)	5, 26, 47, 147, 164, 175, 240, 264, 424
CviKI_1	RGCY	9 cut(s)	5, 26, 47, 147, 164, 175, 240, 264, 424
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	414, 476
DpnII	GATC	2 cut(s)	412, 474
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	4 cut(s)	132, 223, 329, 352
FaiI	YATR	8 cut(s)	83, 130, 221, 227, 327, 345, 350, 407
FatI	CATG	4 cut(s)	128, 219, 325, 348
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	3 cut(s)	6, 48, 186
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	26, 175
Hin1II	CATG	4 cut(s)	132, 223, 329, 352
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	3 cut(s)	155, 388, 457
HphI	GGTGA	4 cut(s)	25, 355, 422, 484
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	6 cut(s)	64, 203, 214, 326, 385, 416
HpyAV	CCTTC	2 cut(s)	186, 325
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	2 cut(s)	128, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	132, 223, 329, 352
Kzo9I	GATC	2 cut(s)	412, 474
LguI	GCTCTTC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	354, 398, 446
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	3 cut(s)	6, 48, 186
MalI	GATC	2 cut(s)	414, 476
MboI	GATC	2 cut(s)	412, 474
MboII	GAAGA	3 cut(s)	100, 247, 316
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	9 cut(s)	40, 101, 209, 299, 335, 372, 380, 394, 437
MnlI	CCTC	4 cut(s)	160, 264, 387, 463
Mph1103I	ATGCAT	1 cut(s)	130
MslI	CAYNNNNRTG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	2 cut(s)	412, 474
NlaIII	CATG	4 cut(s)	132, 223, 329, 352
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	2 cut(s)	132, 223
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	155, 388, 457
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	423
PsrI	GAACNNNNNNTAC	2 cut(s)	183, 215
PstNI	CAGNNNCTG	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	230
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	2 cut(s)	412, 474
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	49, 166, 171, 266, 426, 474
SfaNI	GCATC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	159, 203, 416
SmoI	CTYRAG	3 cut(s)	159, 203, 416
Sse9I	AATT	9 cut(s)	40, 101, 209, 299, 335, 372, 380, 394, 437
SspMI	CTAG	3 cut(s)	6, 48, 186
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	477
TasI	AATT	9 cut(s)	40, 101, 209, 299, 335, 372, 380, 394, 437
TfiI	GAWTC	3 cut(s)	155, 388, 457
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	439
XapI	RAATTY	3 cut(s)	209, 372, 394
XceI	RCATGY	2 cut(s)	132, 223
XspI	CTAG	3 cut(s)	6, 48, 186
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.