Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

6775722 .. 6780580

Gene Structure 4859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGAGAAGACAAGAAAGATGGTCGACCATGAGACCATCTTAATGCAAAGAACAGATAAAACCCGAGAGCAGATCAGAAAGTTGAAAAGAGACAACCGGAAAAAGAAGATCACTCATGTGATGTTCCGCTGTTTTGATTTTAGTGATTTTGTTGAGTATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

54

Amino Acids

6.81

Weight (kDa)

9.91

Isoelectric Point (pI)

20.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	26, 84
Ama87I	CYCGRG	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	14
BccI	CCATC	2 cut(s)	13, 44
BcoDI	GTCTC	2 cut(s)	26, 84
BmeT110I	CYCGRG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	26, 84
Bso31I	GGTCTC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	72, 108
BspACI	CCGC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	26
BssMI	GATC	2 cut(s)	72, 108
BstKTI	GATC	2 cut(s)	75, 111
BstMAI	GTCTC	2 cut(s)	26, 84
BstMBI	GATC	2 cut(s)	72, 108
BstV2I	GAAGAC	1 cut(s)	14
CviAII	CATG	2 cut(s)	29, 116
DpnI	GATC	2 cut(s)	74, 110
DpnII	GATC	2 cut(s)	72, 108
Eco31I	GGTCTC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	63
FaeI	CATG	2 cut(s)	32, 119
FaiI	YATR	3 cut(s)	30, 117, 163
FatI	CATG	2 cut(s)	28, 115
FblI	GTMKAC	1 cut(s)	24
FspEI	CC	8 cut(s)	5, 41, 49, 76, 77, 82, 110, 140
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	2 cut(s)	32, 119
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	46
Hsp92II	CATG	2 cut(s)	32, 119
Kzo9I	GATC	2 cut(s)	72, 108
LpnPI	CCDG	1 cut(s)	110
MalI	GATC	2 cut(s)	74, 110
MboI	GATC	2 cut(s)	72, 108
MboII	GAAGA	2 cut(s)	19, 118
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	2 cut(s)	41, 116
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	1 cut(s)	97
NdeII	GATC	2 cut(s)	72, 108
NlaIII	CATG	2 cut(s)	32, 119
OliI	CACNNNNGTG	1 cut(s)	116
RseI	CAYNNNNRTG	2 cut(s)	41, 116
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	72, 108
SgeI	CNNG	6 cut(s)	24, 41, 75, 77, 109, 128
SmiMI	CAYNNNNRTG	2 cut(s)	41, 116
SsiI	CCGC	1 cut(s)	127
TaqI	TCGA	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.