Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

8964031 .. 8965029

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCTGCTTTAAATAGAGCAGAGTCTCTTCAGGGCAAGAGCAAACCAGAAAGGCCATTTCTTCATTCCCTTCTTCCCAGTTTGCAACATTTTCATCTTTTCTTTCTAGCCATGACTAGAAAGAAGGTGAAACTTGCCTACATCACTAATGATAGTGCTCGAAAAGCAACATATAAGAAAAGGAAGAAGGGTCTTATGAAAAAGGTGAGCGAACTCACCACCCTTTGTGACATTGATGCTTGTGCTATTATCTACAGCCCCTATGACTCCCGGCCTGAAATTTGGCCTTCTCCCTTAGGAGTCCAACGTGTGCTTGCGCAGTTCAAGACCATGCCTGAAATGGAGCAAAGCAAGAAGATGGTGAATCAAGAGAGTTTCTTGAGGCAAAGAATCAACAAGGCTCAGGAACAACTCAAGAAGCAAAAGAAAGACAACCGAGAAAAGGAGATGGCTCGTGTGATGTTCCAAAGCCTAACTGGAAAGTCTCTCCAGGGCTTGACACTGTCAGACCTAACTGATCTTGGCTGGGTCATTGACCAGCACTTGAAGGAGTTACATCTCAGGATGAAGAACATTAAGGAGGAGGTTGTGAAGAGCCAGAACCAAGTGAAAGGAGCACAAGGGGTGTCATCTGCTGTAGCAGATCATAGAATGGTGGCGATGAAGAGTAATATAGAGGACAGTGGCAGCAACGTGGCAATGAAGAGTGGTGAAGAGGGCAGTAGCATGCAGCATGCAGCCCTTGACAGGCAAGCTTTTGATCACATGCATAACATGGAGGCAATGCAGCTCCAAATGATGCATATGGCAGCTCAGAAGCAGCAAAATCACTGGTTCATGGATATGATGAATGCGCCGCCACAACCACCACTGCCACATCCAGATAGTCATGAGCATATGGGGTTTACCAGTGAGGATATGATGCTTCCCTTCGCGGATCATAACCACAGCACTATGTGGCCGAATCCTCCTCCTGCTGGCGGCTTTAATTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

332

Amino Acids

37.92

Weight (kDa)

9.38

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	47 - 88	1e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
AccII	CGCG	1 cut(s)	935
AciI	CCGC	3 cut(s)	857, 935, 981
AclWI	GGATC	1 cut(s)	945
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	957
AfiI	CCNNNNNNNGG	4 cut(s)	442, 747, 977, 980
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	325, 547
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	3 cut(s)	755, 790, 812
AluI	AGCT	3 cut(s)	755, 790, 812
Alw21I	GWGCWC	2 cut(s)	160, 619
Alw26I	GTCTC	2 cut(s)	30, 489
AlwI	GGATC	1 cut(s)	945
AoxI	GGCC	4 cut(s)	53, 272, 284, 959
ApeKI	GCWGC	6 cut(s)	687, 730, 737, 787, 809, 820
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	319, 856
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	5 cut(s)	139, 208, 217, 373, 722
AxyI	CCTNAGG	1 cut(s)	295
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	2 cut(s)	160, 619
BbvI	GCAGC	6 cut(s)	699, 742, 749, 799, 821, 832
BccI	CCATC	2 cut(s)	352, 442
BciT130I	CCWGG	1 cut(s)	491
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	30, 489
BfaI	CTAG	2 cut(s)	107, 117
BfmI	CTRYAG	2 cut(s)	253, 636
BisI	GCNGC	8 cut(s)	688, 731, 738, 788, 810, 821, 857, 982
BlsI	GCNGC	8 cut(s)	689, 732, 739, 789, 811, 822, 858, 983
Bme1390I	CCNGG	2 cut(s)	271, 491
BmrFI	CCNGG	2 cut(s)	271, 491
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	3 cut(s)	226, 789, 912
BmuI	ACTGGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	398, 400
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	4 cut(s)	442, 747, 977, 980
Bse1I	ACTGG	4 cut(s)	78, 481, 836, 909
Bse21I	CCTNAGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	705, 789
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	2 cut(s)	570, 877
BseLI	CCNNNNNNNGG	4 cut(s)	442, 747, 977, 980
BseMI	GCAATG	2 cut(s)	705, 789
BseMII	CTCAG	3 cut(s)	416, 574, 827
BseNI	ACTGG	4 cut(s)	78, 481, 836, 909
BseRI	GAGGAG	2 cut(s)	596, 960
BseXI	GCAGC	6 cut(s)	699, 742, 749, 799, 821, 832
BseYI	CCCAGC	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	935
BshFI	GGCC	4 cut(s)	55, 274, 286, 961
BsiHKAI	GWGCWC	2 cut(s)	160, 619
BsiSI	CCGG	1 cut(s)	271
BslI	CCNNNNNNNGG	4 cut(s)	442, 747, 977, 980
BsmAI	GTCTC	2 cut(s)	30, 489
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	4 cut(s)	55, 274, 286, 961
Bsp1286I	GDGCHC	2 cut(s)	160, 619
Bsp143I	GATC	4 cut(s)	517, 643, 760, 937
BspACI	CCGC	3 cut(s)	857, 935, 981
BspANI	GGCC	4 cut(s)	55, 274, 286, 961
BspCNI	CTCAG	3 cut(s)	415, 573, 826
BspFNI	CGCG	1 cut(s)	935
BspHI	TCATGA	1 cut(s)	889
BspPI	GGATC	1 cut(s)	945
BspQI	GCTCTTC	1 cut(s)	587
BsrDI	GCAATG	2 cut(s)	705, 789
BsrI	ACTGG	4 cut(s)	78, 481, 836, 909
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	4 cut(s)	517, 643, 760, 937
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	504, 683
Bst6I	CTCTTC	5 cut(s)	33, 587, 659, 698, 708
BstC8I	GCNNGC	5 cut(s)	315, 728, 735, 753, 979
BstDEI	CTNAG	4 cut(s)	295, 402, 560, 813
BstF5I	GGATG	2 cut(s)	570, 877
BstFNI	CGCG	1 cut(s)	935
BstHHI	GCGC	2 cut(s)	319, 856
BstKTI	GATC	4 cut(s)	520, 646, 763, 940
BstMAI	GTCTC	2 cut(s)	30, 489
BstMBI	GATC	4 cut(s)	517, 643, 760, 937
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	3 cut(s)	730, 737, 769
BstSCI	CCNGG	2 cut(s)	269, 489
BstSFI	CTRYAG	2 cut(s)	253, 636
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	6 cut(s)	699, 742, 749, 799, 821, 832
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	55, 274, 286, 961
BtgZI	GCGATG	1 cut(s)	674
BtsCI	GGATG	2 cut(s)	570, 877
BtsI	GCAGTG	1 cut(s)	869
BtsIMutI	CAGTG	5 cut(s)	500, 688, 829, 869, 916
Cac8I	GCNNGC	5 cut(s)	315, 728, 735, 753, 979
CciI	TCATGA	1 cut(s)	889
CfoI	GCGC	2 cut(s)	319, 856
CviAII	CATG	8 cut(s)	112, 331, 727, 734, 766, 775, 838, 890
DdeI	CTNAG	4 cut(s)	295, 402, 560, 813
DpnI	GATC	4 cut(s)	519, 645, 762, 939
DpnII	GATC	4 cut(s)	517, 643, 760, 937
DraI	TTTAAA	1 cut(s)	12
DraIII	CACNNNGTG	1 cut(s)	957
EaeI	YGGCCR	1 cut(s)	959
Eam1104I	CTCTTC	5 cut(s)	33, 587, 659, 698, 708
EarI	CTCTTC	5 cut(s)	33, 587, 659, 698, 708
Eco57I	CTGAAG	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	489
EcoT22I	ATGCAT	2 cut(s)	771, 804
FaeI	CATG	8 cut(s)	115, 334, 730, 737, 769, 778, 841, 893
FatI	CATG	8 cut(s)	111, 330, 726, 733, 765, 774, 837, 889
FauNDI	CATATG	2 cut(s)	804, 897
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	8 cut(s)	688, 731, 738, 788, 810, 821, 857, 982
FokI	GGATG	2 cut(s)	577, 864
Fsp4HI	GCNGC	8 cut(s)	688, 731, 738, 788, 810, 821, 857, 982
FspBI	CTAG	2 cut(s)	107, 117
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	2 cut(s)	318, 855
GluI	GCNGC	8 cut(s)	688, 731, 738, 788, 810, 821, 857, 982
GsaI	CCCAGC	1 cut(s)	529
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	4 cut(s)	55, 274, 286, 961
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	2 cut(s)	319, 856
Hin1II	CATG	8 cut(s)	115, 334, 730, 737, 769, 778, 841, 893
Hin6I	GCGC	2 cut(s)	317, 854
HinP1I	GCGC	2 cut(s)	317, 854
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	6 cut(s)	23, 266, 300, 364, 390, 964
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	5 cut(s)	139, 208, 217, 373, 722
Hpy166II	GTNNAC	1 cut(s)	906
Hpy188I	TCNGA	2 cut(s)	508, 816
Hpy188III	TCNNGA	8 cut(s)	325, 368, 379, 404, 415, 562, 881, 890
Hpy8I	GTNNAC	1 cut(s)	906
HpyAV	CCTTC	6 cut(s)	80, 118, 181, 297, 541, 940
HpyCH4III	ACNGT	2 cut(s)	504, 683
HpyCH4IV	ACGT	2 cut(s)	307, 693
HpyCH4V	TGCA	6 cut(s)	85, 730, 737, 769, 787, 802
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	4 cut(s)	295, 402, 560, 813
HpySE526I	ACGT	2 cut(s)	307, 693
Hsp92II	CATG	8 cut(s)	115, 334, 730, 737, 769, 778, 841, 893
HspAI	GCGC	2 cut(s)	317, 854
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	4 cut(s)	517, 643, 760, 937
LguI	GCTCTTC	1 cut(s)	587
LmnI	GCTCC	3 cut(s)	343, 614, 795
Lsp1109I	GCAGC	6 cut(s)	699, 742, 749, 799, 821, 832
LweI	GCATC	3 cut(s)	226, 789, 912
MaeI	CTAG	2 cut(s)	107, 117
MaeII	ACGT	2 cut(s)	307, 693
MaeIII	GTNAC	2 cut(s)	227, 552
MalI	GATC	4 cut(s)	519, 645, 762, 939
MboI	GATC	4 cut(s)	517, 643, 760, 937
MhlI	GDGCHC	2 cut(s)	160, 619
MluCI	AATT	2 cut(s)	279, 988
MlyI	GAGTC	3 cut(s)	32, 260, 309
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	9 cut(s)	375, 574, 577, 670, 709, 772, 907, 978, 981
Mph1103I	ATGCAT	2 cut(s)	771, 804
MseI	TTAA	3 cut(s)	11, 576, 987
MslI	CAYNNNNRTG	1 cut(s)	842
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	271, 491
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	271
NdeI	CATATG	2 cut(s)	804, 897
NdeII	GATC	4 cut(s)	517, 643, 760, 937
NlaIII	CATG	8 cut(s)	115, 334, 730, 737, 769, 778, 841, 893
NmuCI	GTSAC	1 cut(s)	227
NsbI	TGCGCA	1 cut(s)	318
NsiI	ATGCAT	2 cut(s)	771, 804
NspI	RCATGY	3 cut(s)	730, 737, 769
PaeI	GCATGC	2 cut(s)	730, 737
PagI	TCATGA	1 cut(s)	889
PciSI	GCTCTTC	1 cut(s)	587
PctI	GAATGC	1 cut(s)	856
PfeI	GAWTC	3 cut(s)	364, 390, 964
PflFI	GACNNNGTC	1 cut(s)	502
PkrI	GCNGC	8 cut(s)	689, 732, 739, 789, 811, 822, 858, 983
PleI	GAGTC	3 cut(s)	31, 260, 308
PpsI	GAGTC	3 cut(s)	31, 260, 308
Psp6I	CCWGG	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	489
PsyI	GACNNNGTC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	842
SapI	GCTCTTC	1 cut(s)	587
SaqAI	TTAA	3 cut(s)	11, 576, 987
SatI	GCNGC	8 cut(s)	688, 731, 738, 788, 810, 821, 857, 982
Sau3AI	GATC	4 cut(s)	517, 643, 760, 937
SchI	GAGTC	3 cut(s)	32, 260, 309
ScrFI	CCNGG	2 cut(s)	271, 491
SduI	GDGCHC	2 cut(s)	160, 619
SetI	ASST	9 cut(s)	129, 207, 310, 513, 588, 696, 757, 792, 814
SfaNI	GCATC	3 cut(s)	226, 789, 912
SfcI	CTRYAG	2 cut(s)	253, 636
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	2 cut(s)	379, 413
SmoI	CTYRAG	2 cut(s)	379, 413
SphI	GCATGC	2 cut(s)	730, 737
Sse9I	AATT	2 cut(s)	279, 988
SsiI	CCGC	3 cut(s)	857, 935, 981
SspMI	CTAG	2 cut(s)	107, 117
StyD4I	CCNGG	2 cut(s)	269, 489
TaaI	ACNGT	2 cut(s)	504, 683
TaiI	ACGT	2 cut(s)	310, 696
TaqI	TCGA	1 cut(s)	160
TasI	AATT	2 cut(s)	279, 988
TauI	GCSGC	2 cut(s)	859, 984
TfiI	GAWTC	3 cut(s)	364, 390, 964
Tru1I	TTAA	3 cut(s)	11, 576, 987
Tru9I	TTAA	3 cut(s)	11, 576, 987
TscAI	CASTG	5 cut(s)	507, 688, 836, 876, 916
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	6 cut(s)	687, 730, 737, 787, 809, 820
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	8 cut(s)	53, 83, 212, 581, 677, 716, 826, 863
TspRI	CASTG	5 cut(s)	507, 688, 836, 876, 916
Tth111I	GACNNNGTC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	3 cut(s)	730, 737, 769
XcmI	CCANNNNNNNNNTGG	2 cut(s)	337, 473
XspI	CTAG	2 cut(s)	107, 117
Zsp2I	ATGCAT	2 cut(s)	771, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.