Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

44968450 .. 44968827

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCGCAGATGGATAAGACAAGAAAGATGGTCGACCTGGAGACCTTCTTACGACAGCGAATTGACAAAGTCTGGGGGCAGGTCAAAAAGCAAAAAAGAGACAACCGAGAAAAGGAGATCACTCAAGTCATGTTTGGTTGTTTGAAGGGGAGAACTCTCTTTGACCTAGAAATGAAAGATCTGCTAGACCTCAATTTTATCATCCAACTTAACCTTAGGGAGGTTGAAATCAAGCAGCTGGCTGCCGATAAGCAAAAGCATGAGGAAAACCAGGAGAACCAGCTCAAGCAGGTGCAAGCTGACCCAATTGCGGTTGAACTCGGCCTAACGACCAAGAGTGCCTTTGGGGAGGAAACCAGCAAAGGTGTGGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

125

Amino Acids

14.63

Weight (kDa)

6.61

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	2 cut(s)	70, 280
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	2 cut(s)	5, 311
AfiI	CCNNNNNNNGG	3 cut(s)	112, 220, 310
AgsI	TTSAA	3 cut(s)	145, 227, 317
AjnI	CCWGG	2 cut(s)	36, 270
AluBI	AGCT	3 cut(s)	238, 283, 299
AluI	AGCT	3 cut(s)	238, 283, 299
Alw26I	GTCTC	2 cut(s)	35, 93
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	235, 242
AxyI	CCTNAGG	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	229, 247
BccI	CCATC	2 cut(s)	4, 22
BciT130I	CCWGG	2 cut(s)	38, 272
BcoDI	GTCTC	2 cut(s)	35, 93
BfaI	CTAG	2 cut(s)	167, 185
BfuAI	ACCTGC	2 cut(s)	70, 280
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	3 cut(s)	5, 236, 243
BlsI	GCNGC	3 cut(s)	6, 237, 244
Bme1390I	CCNGG	2 cut(s)	38, 272
BmrFI	CCNGG	2 cut(s)	38, 272
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	108, 269
BsaI	GGTCTC	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 220, 310
Bse21I	CCTNAGG	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	38, 272
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	112, 220, 310
BseXI	GCAGC	2 cut(s)	229, 247
BshFI	GGCC	1 cut(s)	324
BslI	CCNNNNNNNGG	3 cut(s)	112, 220, 310
BsmAI	GTCTC	2 cut(s)	35, 93
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	117, 178
BspACI	CCGC	2 cut(s)	5, 311
BspANI	GGCC	1 cut(s)	324
BspMI	ACCTGC	2 cut(s)	70, 280
BspTNI	GGTCTC	1 cut(s)	35
BssMI	GATC	2 cut(s)	117, 178
Bst2UI	CCWGG	2 cut(s)	38, 272
BstC8I	GCNNGC	2 cut(s)	240, 297
BstDEI	CTNAG	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	120, 181
BstMAI	GTCTC	2 cut(s)	35, 93
BstMBI	GATC	2 cut(s)	117, 178
BstNI	CCWGG	2 cut(s)	38, 272
BstSCI	CCNGG	2 cut(s)	36, 270
BstV1I	GCAGC	2 cut(s)	229, 247
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	201
BveI	ACCTGC	2 cut(s)	70, 280
Cac8I	GCNNGC	2 cut(s)	240, 297
CviAII	CATG	2 cut(s)	130, 260
CviJI	RGCY	5 cut(s)	238, 242, 283, 299, 324
CviKI_1	RGCY	5 cut(s)	238, 242, 283, 299, 324
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	2 cut(s)	119, 180
DpnII	GATC	2 cut(s)	117, 178
Eco31I	GGTCTC	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	36, 270
FaeI	CATG	2 cut(s)	133, 263
FaiI	YATR	2 cut(s)	131, 261
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	2 cut(s)	129, 259
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	5, 236, 243
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	3 cut(s)	5, 236, 243
FspBI	CTAG	2 cut(s)	167, 185
GluI	GCNGC	3 cut(s)	5, 236, 243
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	133, 263
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	55, 139
HpyCH4V	TGCA	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	133, 263
Kzo9I	GATC	2 cut(s)	117, 178
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	2 cut(s)	229, 247
MaeI	CTAG	2 cut(s)	167, 185
MalI	GATC	2 cut(s)	119, 180
MboI	GATC	2 cut(s)	117, 178
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	3 cut(s)	60, 193, 306
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	4 cut(s)	200, 214, 256, 343
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	238
MspR9I	CCNGG	2 cut(s)	38, 272
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	38, 272
NdeII	GATC	2 cut(s)	117, 178
NlaIII	CATG	2 cut(s)	133, 263
NmeAIII	GCCGAG	1 cut(s)	300
PaqCI	CACCTGC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	6, 237, 244
Psp6I	CCWGG	2 cut(s)	36, 270
PspGI	CCWGG	2 cut(s)	36, 270
PsuI	RGATCY	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	5, 236, 243
Sau3AI	GATC	2 cut(s)	117, 178
ScrFI	CCNGG	2 cut(s)	38, 272
SmlI	CTYRAG	2 cut(s)	123, 284
SmoI	CTYRAG	2 cut(s)	123, 284
Sse9I	AATT	3 cut(s)	60, 193, 306
SsiI	CCGC	2 cut(s)	5, 311
SspMI	CTAG	2 cut(s)	167, 185
StyD4I	CCNGG	2 cut(s)	36, 270
TaqI	TCGA	1 cut(s)	33
TasI	AATT	3 cut(s)	60, 193, 306
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	2 cut(s)	235, 242
TspDTI	ATGAA	1 cut(s)	188
Tth111I	GACNNNGTC	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	2 cut(s)	167, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.