Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

14740800 .. 14741360

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCAAGAAAGAAGGTGAAATTGGCCTACATCACTGATGACAGTGCTCGCAAAGCGACATTCAAGAAGAGGAAGAAGGGTCTTATGAAGAAGGTGAGTGAACTCTCCACTCTTTGTGATGTTAATGCTTGTGCTATAATCTACAGCCCCTATGACTCCCAACCAGAGGTCTGGCCTTCCCCACAGGGAGTTCAAAGCGTCCTTGCACGATTCAATAGCATGCCTTCCATGGACCAAAGCAAGAAGATGTTTAACCAAGATACCTATCTGAGAGAAAGGATTGGGAAAGTTCAAGAGCAGCTCAAGAACCAGAAGAAGGAAAATCGAAAGAAGGAGATTGAGCGTGTCATGTTCCAGAGCCTCACAGGAAAGTCCCTCCAGGGCTTGATGCATATGGACTTGAAGGATCTGGACAGGACCATTGACCAGCATTTGGAGCAGATACAAAGCAGGGTGAAGAGTATCACGGAGGAGGCTTTGAAGAATCAGAGCCAGGAGCAAGGAGCCTCAGTCGCAGCAGATCATAAACCGGATCATGTTATTAAAAGGCTGACGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

187

Amino Acids

21.41

Weight (kDa)

9.7

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	3.1e-19	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	433
AclWI	GGATC	2 cut(s)	414, 540
AfiI	CCNNNNNNNGG	3 cut(s)	166, 316, 433
AgsI	TTSAA	6 cut(s)	64, 194, 214, 293, 403, 481
AjnI	CCWGG	2 cut(s)	378, 492
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	414, 540
AoxI	GGCC	2 cut(s)	24, 173
ApeKI	GCWGC	2 cut(s)	298, 515
AspS9I	GGNCC	2 cut(s)	232, 417
AsuHPI	GGTGA	3 cut(s)	28, 106, 466
AvaII	GGWCC	2 cut(s)	232, 417
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	310, 527
BciT130I	CCWGG	2 cut(s)	380, 494
BfaI	CTAG	1 cut(s)	559
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	2 cut(s)	299, 516
BlsI	GCNGC	2 cut(s)	300, 517
Bme1390I	CCNGG	2 cut(s)	380, 494
Bme18I	GGWCC	2 cut(s)	232, 417
BmgT120I	GGNCC	2 cut(s)	232, 417
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	2 cut(s)	380, 494
BmsI	GCATC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	228, 379
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 316, 433
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	380, 494
BseDI	CCNNGG	2 cut(s)	228, 379
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	3 cut(s)	166, 316, 433
BseMII	CTCAG	2 cut(s)	260, 522
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	310, 527
BshFI	GGCC	2 cut(s)	26, 175
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	3 cut(s)	166, 316, 433
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	26, 175
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	4 cut(s)	406, 520, 532, 555
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	2 cut(s)	26, 175
BspCNI	CTCAG	2 cut(s)	261, 521
BspLI	GGNNCC	1 cut(s)	505
BspPI	GGATC	2 cut(s)	414, 540
BssECI	CCNNGG	2 cut(s)	228, 379
BssMI	GATC	4 cut(s)	406, 520, 532, 555
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	380, 494
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	62, 452
BstC8I	GCNNGC	2 cut(s)	49, 221
BstDEI	CTNAG	2 cut(s)	269, 508
BstDSI	CCRYGG	1 cut(s)	228
BstKTI	GATC	4 cut(s)	409, 523, 535, 558
BstMBI	GATC	4 cut(s)	406, 520, 532, 555
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 436, 512
BstNI	CCWGG	2 cut(s)	380, 494
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	378, 492
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	310, 527
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	26, 175
BtgI	CCRYGG	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	33, 49
Cac8I	GCNNGC	2 cut(s)	49, 221
Cfr13I	GGNCC	2 cut(s)	232, 417
CseI	GACGC	1 cut(s)	187
CviAII	CATG	4 cut(s)	220, 229, 349, 536
DdeI	CTNAG	2 cut(s)	269, 508
DpnI	GATC	4 cut(s)	408, 522, 534, 557
DpnII	GATC	4 cut(s)	406, 520, 532, 555
Eam1104I	CTCTTC	2 cut(s)	62, 452
EarI	CTCTTC	2 cut(s)	62, 452
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	232, 417
EcoRII	CCWGG	2 cut(s)	378, 492
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	4 cut(s)	223, 232, 352, 539
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	4 cut(s)	219, 228, 348, 535
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	299, 516
Fsp4HI	GCNGC	2 cut(s)	299, 516
FspBI	CTAG	1 cut(s)	559
GluI	GCNGC	2 cut(s)	299, 516
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	26, 175
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	223, 232, 352, 539
HinfI	GANTC	3 cut(s)	155, 210, 484
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	3 cut(s)	28, 106, 466
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	270, 489
Hpy188III	TCNNGA	5 cut(s)	64, 293, 304, 355, 410
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	8 cut(s)	7, 70, 85, 186, 234, 310, 325, 397
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	206, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 436, 512
HpyF3I	CTNAG	2 cut(s)	269, 508
Hsp92II	CATG	4 cut(s)	223, 232, 352, 539
Kzo9I	GATC	4 cut(s)	406, 520, 532, 555
LmnI	GCTCC	3 cut(s)	436, 496, 503
Lsp1109I	GCAGC	2 cut(s)	310, 527
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	559
MalI	GATC	4 cut(s)	408, 522, 534, 557
MboI	GATC	4 cut(s)	406, 520, 532, 555
MboII	GAAGA	7 cut(s)	79, 85, 100, 256, 325, 469, 493
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	63, 160, 371, 386, 463, 466, 517
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	3 cut(s)	123, 252, 543
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	380, 494
MvaI	CCWGG	2 cut(s)	380, 494
MwoI	GCNNNNNNNGC	3 cut(s)	53, 436, 512
NcoI	CCATGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	4 cut(s)	406, 520, 532, 555
NlaIII	CATG	4 cut(s)	223, 232, 352, 539
NlaIV	GGNNCC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	223
PaeI	GCATGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	210, 484
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	300, 517
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	2 cut(s)	378, 492
PspGI	CCWGG	2 cut(s)	378, 492
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	2 cut(s)	232, 417
PsuI	RGATCY	1 cut(s)	406
SaqAI	TTAA	3 cut(s)	123, 252, 543
SatI	GCNGC	2 cut(s)	299, 516
Sau3AI	GATC	4 cut(s)	406, 520, 532, 555
Sau96I	GGNCC	2 cut(s)	232, 417
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	380, 494
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	5 cut(s)	18, 96, 171, 266, 303
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	2 cut(s)	232, 417
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	1 cut(s)	20
SspMI	CTAG	1 cut(s)	559
StyD4I	CCNGG	2 cut(s)	378, 492
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	325
TasI	AATT	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	210, 484
Tru1I	TTAA	3 cut(s)	123, 252, 543
Tru9I	TTAA	3 cut(s)	123, 252, 543
TscAI	CASTG	2 cut(s)	40, 49
TseI	GCWGC	2 cut(s)	298, 515
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	2 cut(s)	40, 49
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	232, 417
XceI	RCATGY	1 cut(s)	223
XspI	CTAG	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.