Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

11820914 .. 11821663

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAAGAGATCACCACTCTTTGTGACATTAAGGCTGCCGCGGTCATCTACAGTCCTTTTGAAACCGAGCCTGAGGTCTTCCCAAATCATCCGGAAGCCCACGAAATGCTGACGAGGTTTCGAAATATGCCGGAGATGGACAAGACAAGAAGGATGATGGACCAGGAGATCTTCTTACGACAACGAATAGACAAAACCCGAGAGCAGATAAGAAAGCAGAAAAGAGACAATCGGGAGAAGCAGATTACTCAAGTTATGTTCGACTGCTTGAAGGGGAAAACTATCTCTAACCTTGAAAGGAAGGATCTGAATGACCTCACTTTTATAATCGAACAGAACCTCAGGGAGTTAGATATCAAAGAGCAAGCTACGGAGGAGCACAAGCAGGGGGAGAACCAGCAGAACCAACTTAACCAGATGACAGGTGCGCCGGAGGCTGTGGAGCTTAACTTGACGAGGAATGCATTTAGAGAGGGAACAAGCAGAGATGTGGGGCAGCAGCAGCACCCAACCACGATGGATGCACAGAGTATGGAGCAGATGCATTTTCAAATGATGCAGGTTGCGGCGCAAAGGCAGCCTCAACAGATGCTCCAACAGCAACCGTGGTTCATGGACATTATGAATCCACCATCGCCACAGACGATGGACTTCCTGCAGCCGCTACCACCACTTCCACCAGGAGCATTCGGAGACAACAGCAGCAGCAATGCTACGTGGCCAAATAATTTGTCATTCCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

249

Amino Acids

29.19

Weight (kDa)

5.49

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	550
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	4 cut(s)	39, 41, 566, 662
AclWI	GGATC	1 cut(s)	312
AcoI	YGGCCR	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	62, 271, 296, 551
AjnI	CCWGG	2 cut(s)	162, 679
AluBI	AGCT	2 cut(s)	368, 445
AluI	AGCT	2 cut(s)	368, 445
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	219, 687
AlwI	GGATC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	198
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	1 cut(s)	719
ApeKI	GCWGC	8 cut(s)	35, 496, 499, 502, 577, 658, 702, 705
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspLEI	GCGC	2 cut(s)	430, 571
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	4
AsuII	TTCGAA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	2 cut(s)	72, 341
BalI	TGGCCA	1 cut(s)	721
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	8 cut(s)	22, 508, 511, 514, 589, 670, 714, 717
BccI	CCATC	5 cut(s)	130, 151, 511, 640, 640
BciT130I	CCWGG	2 cut(s)	164, 681
BcoDI	GTCTC	2 cut(s)	219, 687
BfmI	CTRYAG	2 cut(s)	49, 656
BfuAI	ACCTGC	1 cut(s)	550
BglII	AGATCT	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	164, 681
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	164, 681
BmsI	GCATC	4 cut(s)	511, 531, 546, 579
BpiI	GAAGAC	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	717
BsaJI	CCNNGG	2 cut(s)	39, 605
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bse21I	CCTNAGG	2 cut(s)	72, 341
Bse3DI	GCAATG	1 cut(s)	715
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	164, 681
BseDI	CCNNGG	2 cut(s)	39, 605
BseGI	GGATG	3 cut(s)	88, 159, 526
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	2 cut(s)	63, 355
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	8 cut(s)	22, 508, 511, 514, 589, 670, 714, 717
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	721
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	92, 131, 431
BsmAI	GTCTC	2 cut(s)	219, 687
BsmI	GAATGC	2 cut(s)	466, 686
BsnI	GGCC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	9, 168, 304
BspACI	CCGC	4 cut(s)	39, 41, 566, 662
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	2 cut(s)	64, 354
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	660
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	715
BssECI	CCNNGG	2 cut(s)	39, 605
BssMI	GATC	3 cut(s)	9, 168, 304
Bst2UI	CCWGG	2 cut(s)	164, 681
Bst4CI	ACNGT	2 cut(s)	53, 606
BstBAI	YACGTR	1 cut(s)	717
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	72, 341
BstDSI	CCRYGG	2 cut(s)	39, 605
BstF5I	GGATG	3 cut(s)	88, 159, 526
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	430, 571
BstKTI	GATC	3 cut(s)	12, 171, 307
BstMAI	GTCTC	2 cut(s)	219, 687
BstMBI	GATC	3 cut(s)	9, 168, 304
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 502, 577, 598
BstNI	CCWGG	2 cut(s)	164, 681
BstSCI	CCNGG	2 cut(s)	162, 679
BstSFI	CTRYAG	2 cut(s)	49, 656
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	8 cut(s)	22, 508, 511, 514, 589, 670, 714, 717
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	168, 304
BstYI	RGATCY	2 cut(s)	168, 304
Bsu36I	CCTNAGG	2 cut(s)	72, 341
BsuRI	GGCC	1 cut(s)	721
BtgI	CCRYGG	2 cut(s)	39, 605
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	3 cut(s)	88, 159, 526
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	2 cut(s)	430, 571
Cfr13I	GGNCC	1 cut(s)	160
Cfr42I	CCGCGG	1 cut(s)	42
CviAII	CATG	1 cut(s)	613
CviJI	RGCY	9 cut(s)	35, 70, 98, 368, 437, 445, 580, 661, 721
CviKI_1	RGCY	9 cut(s)	35, 70, 98, 368, 437, 445, 580, 661, 721
DdeI	CTNAG	2 cut(s)	72, 341
DpnI	GATC	3 cut(s)	11, 170, 306
DpnII	GATC	3 cut(s)	9, 168, 304
EaeI	YGGCCR	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	160
Eco81I	CCTNAGG	2 cut(s)	72, 341
Eco88I	CYCGRG	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	162, 679
EcoRV	GATATC	1 cut(s)	355
EcoT22I	ATGCAT	2 cut(s)	466, 546
FaeI	CATG	1 cut(s)	616
FaiI	YATR	6 cut(s)	128, 257, 326, 533, 614, 623
FatI	CATG	1 cut(s)	612
FokI	GGATG	3 cut(s)	75, 166, 533
GlaI	GCGC	2 cut(s)	429, 570
HaeIII	GGCC	1 cut(s)	721
HapII	CCGG	3 cut(s)	92, 131, 431
HhaI	GCGC	2 cut(s)	430, 571
Hin1II	CATG	1 cut(s)	616
Hin6I	GCGC	2 cut(s)	428, 569
HinP1I	GCGC	2 cut(s)	428, 569
HinfI	GANTC	1 cut(s)	625
HpaII	CCGG	3 cut(s)	92, 131, 431
HphI	GGTGA	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	309, 692
Hpy188III	TCNNGA	2 cut(s)	92, 233
HpyAV	CCTTC	3 cut(s)	144, 265, 295
HpyCH4III	ACNGT	2 cut(s)	53, 606
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	5 cut(s)	464, 524, 544, 559, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 502, 577, 598
HpyF3I	CTNAG	2 cut(s)	72, 341
HpySE526I	ACGT	1 cut(s)	716
Hsp92II	CATG	1 cut(s)	616
HspAI	GCGC	2 cut(s)	428, 569
Kpn2I	TCCGGA	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	9, 168, 304
LmnI	GCTCC	5 cut(s)	376, 442, 535, 597, 683
Lsp1109I	GCAGC	8 cut(s)	22, 508, 511, 514, 589, 670, 714, 717
LweI	GCATC	4 cut(s)	511, 531, 546, 579
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	3 cut(s)	11, 170, 306
MboI	GATC	3 cut(s)	9, 168, 304
MboII	GAAGA	2 cut(s)	70, 163
MflI	RGATCY	2 cut(s)	168, 304
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	721
MluCI	AATT	1 cut(s)	727
MluNI	TGGCCA	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	9 cut(s)	67, 108, 326, 350, 367, 427, 450, 466, 591
Mox20I	TGGCCA	1 cut(s)	721
Mph1103I	ATGCAT	2 cut(s)	466, 546
MroI	TCCGGA	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	721
MseI	TTAA	3 cut(s)	30, 411, 447
Msp20I	TGGCCA	1 cut(s)	721
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	3 cut(s)	92, 131, 431
MspR9I	CCNGG	2 cut(s)	164, 681
Mva1269I	GAATGC	2 cut(s)	466, 686
MvaI	CCWGG	2 cut(s)	164, 681
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	434, 502, 577, 598
NdeII	GATC	3 cut(s)	9, 168, 304
NlaIII	CATG	1 cut(s)	616
NmuCI	GTSAC	1 cut(s)	23
NsiI	ATGCAT	2 cut(s)	466, 546
NspV	TTCGAA	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	641
PctI	GAATGC	2 cut(s)	466, 686
PfeI	GAWTC	1 cut(s)	625
Ppu21I	YACGTR	1 cut(s)	717
PsiI	TTATAA	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	162, 679
PspGI	CCWGG	2 cut(s)	162, 679
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	2 cut(s)	168, 304
SacII	CCGCGG	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	30, 411, 447
Sau3AI	GATC	3 cut(s)	9, 168, 304
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	164, 681
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	4 cut(s)	511, 531, 546, 579
SfcI	CTRYAG	2 cut(s)	49, 656
Sfr303I	CCGCGG	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	727
SsiI	CCGC	4 cut(s)	39, 41, 566, 662
StyD4I	CCNGG	2 cut(s)	162, 679
TaaI	ACNGT	2 cut(s)	53, 606
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	3 cut(s)	121, 261, 330
TasI	AATT	1 cut(s)	727
TauI	GCSGC	3 cut(s)	41, 569, 664
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	3 cut(s)	30, 411, 447
Tru9I	TTAA	3 cut(s)	30, 411, 447
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	8 cut(s)	35, 496, 499, 502, 577, 658, 702, 705
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	3 cut(s)	17, 601, 638
TspGWI	ACGGA	2 cut(s)	386, 728
VpaK11BI	GGWCC	1 cut(s)	160
Zsp2I	ATGCAT	2 cut(s)	466, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.