Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

5017992 .. 5019085

Gene Structure 1094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGACTAGAAAGAAGGTGAAACTTGCCTTCATCACTAATGACAGTGCTCGAAAAGCTACATATAAGAAAAGGAAGAAGGGTCTTATGAAGAAGGTGACTGAACTCACCACCCTTTGTGACATTGATGCTTGTGCTATTATCTACAGCCCTTATGACTCCCAGCCTGAAGTCTGGCCTTCCCCGTTGGGAGTCCATCGCGTGCTTGCGTATTTCAAGACCATGCCGGAAATGGAGCAAAGCAAGAAGATGATGAATCAGGAGAGTTTCCTGAGGCAAAGAATCAACAAGGCTCATGAACAGCTCAAGAAGCAAAAGAAAGACAACCGAGAAATGGAGATGGCGCGCATCATGTTCCAAAGCCTAACTGGTAATAACTCTCTCCAAGGCTTGACCCTCTCAGACCTGACTGATCTCAACTGGGTCATTGACCAACACCAGAAAGAGTTACAACTAAGGATGAAGAACATCAAGGAGGAGGTTGTGAAGAGCAAGCACCAGGTGCAAGGGGTGAAGAATAATGGAGAGGGCAGCAGTAACAGCATGGCGATGAAGAGTGACGAAGAGGGCAGCAACATGCATGCTGCCATGGGCAGGGAAGCTTTTGATCACATGCATAACATGGAGGCAATGCAGTTCCAGATGATGCAGGTGCCGGCTCAGAAGGAACCCTTGTTCATGGACCTGATGAATGCGCTACCTCCACCACCACAGCCACATCCAGATCACCATCAACATATGGGATTTACAGGGGAGGATATGATGCTTCCCTTCGCAGAGCAAAGCCACAGTATCATGTGGCCAAATCCTCCTCCTGCTAATGGCTTTAATTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

279

Amino Acids

32.03

Weight (kDa)

8.89

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	2.4e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	649
AccII	CGCG	2 cut(s)	198, 343
AcoI	YGGCCR	1 cut(s)	797
AcuI	CTGAAG	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	499
AfiI	CCNNNNNNNGG	3 cut(s)	331, 591, 818
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	495
AloI	GAACNNNNNNTCC	2 cut(s)	656, 688
AluBI	AGCT	3 cut(s)	56, 301, 599
AluI	AGCT	3 cut(s)	56, 301, 599
Alw21I	GWGCWC	1 cut(s)	49
AoxI	GGCC	2 cut(s)	173, 797
ApeKI	GCWGC	3 cut(s)	528, 567, 581
AspLEI	GCGC	3 cut(s)	343, 345, 694
AspS9I	GGNCC	1 cut(s)	679
AsuHPI	GGTGA	5 cut(s)	28, 97, 106, 520, 716
AvaII	GGWCC	1 cut(s)	679
AxyI	CCTNAGG	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	649
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	540, 568, 579
BccI	CCATC	3 cut(s)	201, 331, 735
BciT130I	CCWGG	1 cut(s)	497
BclI	TGATCA	1 cut(s)	604
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	3 cut(s)	529, 568, 582
BlsI	GCNGC	3 cut(s)	530, 569, 583
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	2 cut(s)	651, 666
BmrFI	CCNGG	1 cut(s)	497
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	4 cut(s)	115, 354, 633, 750
BmuI	ACTGGG	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	382, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 591, 818
Bse118I	RCCGGY	1 cut(s)	652
Bse1I	ACTGG	2 cut(s)	370, 422
Bse21I	CCTNAGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	633
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	382, 585
BseGI	GGATG	2 cut(s)	462, 715
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	3 cut(s)	331, 591, 818
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	3 cut(s)	260, 411, 671
BseNI	ACTGG	2 cut(s)	370, 422
BsePI	GCGCGC	1 cut(s)	341
BseRI	GAGGAG	2 cut(s)	488, 798
BseXI	GCAGC	3 cut(s)	540, 568, 579
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	198, 343
BshFI	GGCC	2 cut(s)	175, 799
BshNI	GGYRCC	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	224, 653
BslI	CCNNNNNNNGG	3 cut(s)	331, 591, 818
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	175, 799
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	409, 604, 721
Bsp19I	CCATGG	1 cut(s)	585
BspANI	GGCC	2 cut(s)	175, 799
BspCNI	CTCAG	3 cut(s)	261, 410, 670
BspFNI	CGCG	2 cut(s)	198, 343
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	651, 666
BspMI	ACCTGC	1 cut(s)	637
BspQI	GCTCTTC	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	633
BsrFI	RCCGGY	1 cut(s)	652
BsrI	ACTGG	2 cut(s)	370, 422
BssAI	RCCGGY	1 cut(s)	652
BssECI	CCNNGG	2 cut(s)	382, 585
BssHII	GCGCGC	1 cut(s)	341
BssMI	GATC	3 cut(s)	409, 604, 721
BssT1I	CCWWGG	2 cut(s)	382, 585
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	44, 788
Bst6I	CTCTTC	3 cut(s)	479, 545, 555
BstAPI	GCANNNNNTGC	1 cut(s)	499
BstC8I	GCNNGC	6 cut(s)	200, 204, 343, 491, 579, 654
BstDEI	CTNAG	4 cut(s)	269, 397, 452, 657
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	462, 715
BstFNI	CGCG	2 cut(s)	198, 343
BstHHI	GCGC	3 cut(s)	343, 345, 694
BstKTI	GATC	3 cut(s)	412, 607, 724
BstMBI	GATC	3 cut(s)	409, 604, 721
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 307, 499, 537
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	3 cut(s)	577, 581, 613
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	198, 343
BstV1I	GCAGC	3 cut(s)	540, 568, 579
Bsu36I	CCTNAGG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	175, 799
BtgI	CCRYGG	1 cut(s)	585
BtgZI	GCGATG	2 cut(s)	179, 560
BtsCI	GGATG	2 cut(s)	462, 715
BtsIMutI	CAGTG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	6 cut(s)	200, 204, 343, 491, 579, 654
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	3 cut(s)	343, 345, 694
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	679
CsiI	ACCWGGT	1 cut(s)	495
DdeI	CTNAG	4 cut(s)	269, 397, 452, 657
DpnI	GATC	3 cut(s)	411, 606, 723
DpnII	GATC	3 cut(s)	409, 604, 721
DraIII	CACNNNGTG	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	797
Eam1104I	CTCTTC	3 cut(s)	479, 545, 555
EarI	CTCTTC	3 cut(s)	479, 545, 555
Eco130I	CCWWGG	2 cut(s)	382, 585
Eco47I	GGWCC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	382, 585
EcoT22I	ATGCAT	2 cut(s)	579, 615
ErhI	CCWWGG	2 cut(s)	382, 585
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FauNDI	CATATG	1 cut(s)	735
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	529, 568, 582
FokI	GGATG	2 cut(s)	469, 702
Fsp4HI	GCNGC	3 cut(s)	529, 568, 582
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	342, 344, 693
GluI	GCNGC	3 cut(s)	529, 568, 582
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	175, 799
HapII	CCGG	2 cut(s)	224, 653
HhaI	GCGC	3 cut(s)	343, 345, 694
Hin6I	GCGC	3 cut(s)	341, 343, 692
HinP1I	GCGC	3 cut(s)	341, 343, 692
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	4 cut(s)	155, 189, 253, 279
HpaII	CCGG	2 cut(s)	224, 653
HphI	GGTGA	5 cut(s)	28, 97, 106, 520, 716
Hpy188I	TCNGA	2 cut(s)	400, 660
Hpy188III	TCNNGA	7 cut(s)	214, 257, 268, 293, 304, 637, 719
HpyAV	CCTTC	7 cut(s)	7, 37, 70, 85, 186, 655, 778
HpyCH4III	ACNGT	2 cut(s)	44, 788
HpyCH4V	TGCA	5 cut(s)	502, 577, 613, 631, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 307, 499, 537
HpyF3I	CTNAG	4 cut(s)	269, 397, 452, 657
HspAI	GCGC	3 cut(s)	341, 343, 692
KroI	GCCGGC	1 cut(s)	652
KroNI	GCCGGC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	409, 604, 721
LguI	GCTCTTC	1 cut(s)	479
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	3 cut(s)	540, 568, 579
LweI	GCATC	4 cut(s)	115, 354, 633, 750
MabI	ACCWGGT	1 cut(s)	495
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	5 cut(s)	94, 116, 444, 533, 554
MalI	GATC	3 cut(s)	411, 606, 723
MboI	GATC	3 cut(s)	409, 604, 721
MboII	GAAGA	8 cut(s)	85, 100, 256, 472, 496, 523, 562, 572
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	799
MluCI	AATT	1 cut(s)	826
MluNI	TGGCCA	1 cut(s)	799
MlyI	GAGTC	2 cut(s)	149, 198
Mox20I	TGGCCA	1 cut(s)	799
Mph1103I	ATGCAT	2 cut(s)	579, 615
MroNI	GCCGGC	1 cut(s)	652
MscI	TGGCCA	1 cut(s)	799
MseI	TTAA	1 cut(s)	825
MslI	CAYNNNNRTG	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	799
MspI	CCGG	2 cut(s)	224, 653
MspR9I	CCNGG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	1 cut(s)	497
MvnI	CGCG	2 cut(s)	198, 343
MwoI	GCNNNNNNNGC	4 cut(s)	53, 307, 499, 537
NaeI	GCCGGC	1 cut(s)	654
NcoI	CCATGG	1 cut(s)	585
NdeI	CATATG	1 cut(s)	735
NdeII	GATC	3 cut(s)	409, 604, 721
NgoMIV	GCCGGC	1 cut(s)	652
NlaIV	GGNNCC	2 cut(s)	651, 666
NmuCI	GTSAC	3 cut(s)	94, 116, 554
NsiI	ATGCAT	2 cut(s)	579, 615
NspI	RCATGY	3 cut(s)	577, 581, 613
PaeI	GCATGC	1 cut(s)	581
PagI	TCATGA	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	637
PauI	GCGCGC	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	479
PctI	GAATGC	1 cut(s)	694
PdiI	GCCGGC	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	253, 279
PkrI	GCNGC	3 cut(s)	530, 569, 583
PleI	GAGTC	2 cut(s)	149, 197
PpsI	GAGTC	2 cut(s)	149, 197
Psp6I	CCWGG	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	651, 666
PspPI	GGNCC	1 cut(s)	679
PteI	GCGCGC	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	545
SapI	GCTCTTC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	825
SatI	GCNGC	3 cut(s)	529, 568, 582
Sau3AI	GATC	3 cut(s)	409, 604, 721
Sau96I	GGNCC	1 cut(s)	679
SchI	GAGTC	2 cut(s)	149, 198
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	49
SexAI	ACCWGGT	1 cut(s)	495
SfaNI	GCATC	4 cut(s)	115, 354, 633, 750
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	679
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	1 cut(s)	826
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	2 cut(s)	382, 585
TaaI	ACNGT	2 cut(s)	44, 788
TaqI	TCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	826
TfiI	GAWTC	2 cut(s)	253, 279
Tru1I	TTAA	1 cut(s)	825
Tru9I	TTAA	1 cut(s)	825
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	3 cut(s)	94, 116, 554
TseI	GCWGC	3 cut(s)	528, 567, 581
Tsp45I	GTSAC	3 cut(s)	94, 116, 554
TspDTI	ATGAA	8 cut(s)	19, 101, 266, 309, 473, 563, 664, 701
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	679
XceI	RCATGY	3 cut(s)	577, 581, 613
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 362
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	2 cut(s)	579, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.