Agamous-like MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_C12 | PF01088 | 13 - 215 | 4.2e-68 | Ubiquitin carboxyl-terminal hydrolase, family 1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 27 |
| AclWI | GGATC | 3 cut(s) | 395, 408, 634 |
| AcuI | CTGAAG | 3 cut(s) | 231, 321, 474 |
| AfaI | GTAC | 2 cut(s) | 171, 388 |
| AgsI | TTSAA | 5 cut(s) | 50, 98, 428, 670, 687 |
| AluBI | AGCT | 4 cut(s) | 53, 467, 550, 620 |
| AluI | AGCT | 4 cut(s) | 53, 467, 550, 620 |
| Alw26I | GTCTC | 1 cut(s) | 663 |
| AlwI | GGATC | 3 cut(s) | 395, 408, 634 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 470 |
| Ama87I | CYCGRG | 1 cut(s) | 653 |
| AoxI | GGCC | 1 cut(s) | 583 |
| ApeKI | GCWGC | 3 cut(s) | 416, 464, 617 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 74, 156 |
| AspS9I | GGNCC | 2 cut(s) | 569, 584 |
| AsuC2I | CCSGG | 1 cut(s) | 697 |
| AsuHPI | GGTGA | 2 cut(s) | 488, 585 |
| AvaI | CYCGRG | 1 cut(s) | 653 |
| AvaII | GGWCC | 1 cut(s) | 569 |
| BamHI | GGATCC | 1 cut(s) | 400 |
| BbsI | GAAGAC | 2 cut(s) | 86, 582 |
| BbvI | GCAGC | 3 cut(s) | 428, 476, 629 |
| BccI | CCATC | 3 cut(s) | 30, 131, 548 |
| BceAI | ACGGC | 1 cut(s) | 598 |
| BcnI | CCSGG | 1 cut(s) | 697 |
| BcoDI | GTCTC | 1 cut(s) | 663 |
| BfmI | CTRYAG | 1 cut(s) | 13 |
| BisI | GCNGC | 3 cut(s) | 417, 465, 618 |
| BlsI | GCNGC | 3 cut(s) | 418, 466, 619 |
| BmcAI | AGTACT | 1 cut(s) | 388 |
| Bme1390I | CCNGG | 1 cut(s) | 697 |
| Bme18I | GGWCC | 1 cut(s) | 569 |
| BmeT110I | CYCGRG | 1 cut(s) | 653 |
| BmgT120I | GGNCC | 2 cut(s) | 569, 584 |
| BmiI | GGNNCC | 2 cut(s) | 159, 402 |
| BmrFI | CCNGG | 1 cut(s) | 697 |
| BmrI | ACTGGG | 1 cut(s) | 16 |
| BmsI | GCATC | 2 cut(s) | 216, 604 |
| BmuI | ACTGGG | 1 cut(s) | 16 |
| BpiI | GAAGAC | 2 cut(s) | 86, 582 |
| BpuMI | CCSGG | 1 cut(s) | 697 |
| BsaJI | CCNNGG | 2 cut(s) | 282, 696 |
| Bse1I | ACTGG | 2 cut(s) | 22, 73 |
| Bse3DI | GCAATG | 2 cut(s) | 295, 675 |
| BseDI | CCNNGG | 2 cut(s) | 282, 696 |
| BseGI | GGATG | 3 cut(s) | 109, 142, 619 |
| BseMI | GCAATG | 2 cut(s) | 295, 675 |
| BseNI | ACTGG | 2 cut(s) | 22, 73 |
| BseXI | GCAGC | 3 cut(s) | 428, 476, 629 |
| BsgI | GTGCAG | 1 cut(s) | 435 |
| BshFI | GGCC | 1 cut(s) | 585 |
| BsiHKCI | CYCGRG | 1 cut(s) | 653 |
| BsiSI | CCGG | 1 cut(s) | 696 |
| BsmAI | GTCTC | 1 cut(s) | 663 |
| BsmI | GAATGC | 2 cut(s) | 119, 419 |
| BsnI | GGCC | 1 cut(s) | 585 |
| BsoBI | CYCGRG | 1 cut(s) | 653 |
| Bsp143I | GATC | 3 cut(s) | 342, 400, 639 |
| BspACI | CCGC | 1 cut(s) | 27 |
| BspANI | GGCC | 1 cut(s) | 585 |
| BspLI | GGNNCC | 2 cut(s) | 159, 402 |
| BspPI | GGATC | 3 cut(s) | 395, 408, 634 |
| BsrDI | GCAATG | 2 cut(s) | 295, 675 |
| BsrI | ACTGG | 2 cut(s) | 22, 73 |
| BssECI | CCNNGG | 2 cut(s) | 282, 696 |
| BssMI | GATC | 3 cut(s) | 342, 400, 639 |
| Bst4CI | ACNGT | 2 cut(s) | 131, 283 |
| Bst6I | CTCTTC | 1 cut(s) | 210 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 470 |
| BstC8I | GCNNGC | 3 cut(s) | 318, 394, 414 |
| BstDEI | CTNAG | 3 cut(s) | 30, 148, 204 |
| BstDSI | CCRYGG | 1 cut(s) | 282 |
| BstF5I | GGATG | 3 cut(s) | 109, 142, 619 |
| BstKTI | GATC | 3 cut(s) | 345, 403, 642 |
| BstMAI | GTCTC | 1 cut(s) | 663 |
| BstMBI | GATC | 3 cut(s) | 342, 400, 639 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 470 |
| BstNSI | RCATGY | 2 cut(s) | 320, 528 |
| BstSCI | CCNGG | 1 cut(s) | 695 |
| BstSFI | CTRYAG | 1 cut(s) | 13 |
| BstV1I | GCAGC | 3 cut(s) | 428, 476, 629 |
| BstV2I | GAAGAC | 2 cut(s) | 86, 582 |
| BstX2I | RGATCY | 1 cut(s) | 400 |
| BstYI | RGATCY | 1 cut(s) | 400 |
| BsuRI | GGCC | 1 cut(s) | 585 |
| BtgI | CCRYGG | 1 cut(s) | 282 |
| BtsCI | GGATG | 3 cut(s) | 109, 142, 619 |
| Cac8I | GCNNGC | 3 cut(s) | 318, 394, 414 |
| CaiI | CAGNNNCTG | 1 cut(s) | 470 |
| Cfr13I | GGNCC | 2 cut(s) | 569, 584 |
| Csp6I | GTAC | 2 cut(s) | 170, 387 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 277, 312 |
| CviAII | CATG | 4 cut(s) | 317, 397, 525, 637 |
| CviJI | RGCY | 9 cut(s) | 5, 40, 53, 166, 467, 488, 550, 585, 620 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 40, 53, 166, 467, 488, 550, 585, 620 |
| CviQI | GTAC | 2 cut(s) | 170, 387 |
| DdeI | CTNAG | 3 cut(s) | 30, 148, 204 |
| DpnI | GATC | 3 cut(s) | 344, 402, 641 |
| DpnII | GATC | 3 cut(s) | 342, 400, 639 |
| DraI | TTTAAA | 1 cut(s) | 382 |
| Eam1104I | CTCTTC | 1 cut(s) | 210 |
| EarI | CTCTTC | 1 cut(s) | 210 |
| Eco47I | GGWCC | 1 cut(s) | 569 |
| Eco57I | CTGAAG | 3 cut(s) | 231, 321, 474 |
| Eco88I | CYCGRG | 1 cut(s) | 653 |
| EcoT22I | ATGCAT | 1 cut(s) | 526 |
| FaeI | CATG | 4 cut(s) | 320, 400, 528, 640 |
| FatI | CATG | 4 cut(s) | 316, 396, 524, 636 |
| Fnu4HI | GCNGC | 3 cut(s) | 417, 465, 618 |
| FokI | GGATG | 3 cut(s) | 116, 149, 626 |
| Fsp4HI | GCNGC | 3 cut(s) | 417, 465, 618 |
| GluI | GCNGC | 3 cut(s) | 417, 465, 618 |
| HaeIII | GGCC | 1 cut(s) | 585 |
| HapII | CCGG | 1 cut(s) | 696 |
| Hin1II | CATG | 4 cut(s) | 320, 400, 528, 640 |
| HincII | GTYRAC | 2 cut(s) | 355, 502 |
| HindII | GTYRAC | 2 cut(s) | 355, 502 |
| HinfI | GANTC | 1 cut(s) | 656 |
| HpaII | CCGG | 1 cut(s) | 696 |
| HphI | GGTGA | 2 cut(s) | 488, 585 |
| Hpy166II | GTNNAC | 4 cut(s) | 127, 355, 502, 532 |
| Hpy188I | TCNGA | 2 cut(s) | 340, 493 |
| Hpy188III | TCNNGA | 5 cut(s) | 47, 59, 98, 643, 653 |
| Hpy8I | GTNNAC | 4 cut(s) | 127, 355, 502, 532 |
| HpyCH4III | ACNGT | 2 cut(s) | 131, 283 |
| HpyCH4IV | ACGT | 3 cut(s) | 123, 498, 672 |
| HpyCH4V | TGCA | 7 cut(s) | 229, 316, 392, 416, 524, 610, 617 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 470 |
| HpyF3I | CTNAG | 3 cut(s) | 30, 148, 204 |
| HpySE526I | ACGT | 3 cut(s) | 123, 498, 672 |
| Hsp92II | CATG | 4 cut(s) | 320, 400, 528, 640 |
| Kzo9I | GATC | 3 cut(s) | 342, 400, 639 |
| LmnI | GCTCC | 1 cut(s) | 409 |
| LpnPI | CCDG | 9 cut(s) | 35, 86, 180, 230, 459, 552, 596, 617, 656 |
| Lsp1109I | GCAGC | 3 cut(s) | 428, 476, 629 |
| LweI | GCATC | 2 cut(s) | 216, 604 |
| MaeII | ACGT | 3 cut(s) | 123, 498, 672 |
| MaeIII | GTNAC | 1 cut(s) | 476 |
| MalI | GATC | 3 cut(s) | 344, 402, 641 |
| MboI | GATC | 3 cut(s) | 342, 400, 639 |
| MboII | GAAGA | 4 cut(s) | 86, 224, 227, 582 |
| MflI | RGATCY | 1 cut(s) | 400 |
| MlyI | GAGTC | 1 cut(s) | 665 |
| MmeI | TCCRAC | 1 cut(s) | 304 |
| MnlI | CCTC | 5 cut(s) | 54, 94, 100, 478, 552 |
| Mph1103I | ATGCAT | 1 cut(s) | 526 |
| MroXI | GAANNNNTTC | 2 cut(s) | 74, 156 |
| MseI | TTAA | 3 cut(s) | 233, 381, 709 |
| MspI | CCGG | 1 cut(s) | 696 |
| MspR9I | CCNGG | 1 cut(s) | 697 |
| Mva1269I | GAATGC | 2 cut(s) | 119, 419 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 470 |
| NciI | CCSGG | 1 cut(s) | 697 |
| NdeII | GATC | 3 cut(s) | 342, 400, 639 |
| NlaIII | CATG | 4 cut(s) | 320, 400, 528, 640 |
| NlaIV | GGNNCC | 2 cut(s) | 159, 402 |
| NmuCI | GTSAC | 1 cut(s) | 476 |
| NsiI | ATGCAT | 1 cut(s) | 526 |
| NspI | RCATGY | 2 cut(s) | 320, 528 |
| PaeI | GCATGC | 1 cut(s) | 320 |
| PctI | GAATGC | 2 cut(s) | 119, 419 |
| PdmI | GAANNNNTTC | 2 cut(s) | 74, 156 |
| PkrI | GCNGC | 3 cut(s) | 418, 466, 619 |
| PleI | GAGTC | 1 cut(s) | 664 |
| PpsI | GAGTC | 1 cut(s) | 664 |
| PspN4I | GGNNCC | 2 cut(s) | 159, 402 |
| PspPI | GGNCC | 2 cut(s) | 569, 584 |
| PstNI | CAGNNNCTG | 1 cut(s) | 470 |
| PsuI | RGATCY | 1 cut(s) | 400 |
| RsaI | GTAC | 2 cut(s) | 171, 388 |
| RsaNI | GTAC | 2 cut(s) | 170, 387 |
| SaqAI | TTAA | 3 cut(s) | 233, 381, 709 |
| SatI | GCNGC | 3 cut(s) | 417, 465, 618 |
| Sau3AI | GATC | 3 cut(s) | 342, 400, 639 |
| Sau96I | GGNCC | 2 cut(s) | 569, 584 |
| ScaI | AGTACT | 1 cut(s) | 388 |
| SchI | GAGTC | 1 cut(s) | 665 |
| ScrFI | CCNGG | 1 cut(s) | 697 |
| SetI | ASST | 8 cut(s) | 55, 126, 469, 501, 552, 571, 622, 675 |
| SfaNI | GCATC | 2 cut(s) | 216, 604 |
| SfcI | CTRYAG | 1 cut(s) | 13 |
| SinI | GGWCC | 1 cut(s) | 569 |
| SphI | GCATGC | 1 cut(s) | 320 |
| SsiI | CCGC | 1 cut(s) | 27 |
| StyD4I | CCNGG | 1 cut(s) | 695 |
| TaaI | ACNGT | 2 cut(s) | 131, 283 |
| TaiI | ACGT | 3 cut(s) | 126, 501, 675 |
| TatI | WGTACW | 2 cut(s) | 169, 386 |
| Tru1I | TTAA | 3 cut(s) | 233, 381, 709 |
| Tru9I | TTAA | 3 cut(s) | 233, 381, 709 |
| TseFI | GTSAC | 1 cut(s) | 476 |
| TseI | GCWGC | 3 cut(s) | 416, 464, 617 |
| Tsp45I | GTSAC | 1 cut(s) | 476 |
| TspDTI | ATGAA | 4 cut(s) | 83, 252, 287, 453 |
| VpaK11BI | GGWCC | 1 cut(s) | 569 |
| XceI | RCATGY | 2 cut(s) | 320, 528 |
| XmnI | GAANNNNTTC | 2 cut(s) | 74, 156 |
| ZrmI | AGTACT | 1 cut(s) | 388 |
| Zsp2I | ATGCAT | 1 cut(s) | 526 |