Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004638.1

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

85185 .. 85784

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004638.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgagactgcgctacattgccaatgagactttcgaacgaatgacatttagaaaaagaaagaaaggtcttctgaagaaggtgggtgagataaccactctctgtgacatcaaggccgcggtgatcatatacagcccctttgatgtcgagctggaggtcttcccaagtcatctggaagtccacgaaatggtaacgaagttccgagatatgccacaaatggacaagacaagaaagatgatcaaccaggagaccttcttacgacatcgaattgacaaagtccgggagcatatcagaaagcaaagaagagacaatcgagaaaaggagatcactcaagttttgaagaaggtgggtgagataaccattctttgtgacatcaaggtggcggcaatcatctacatcccctttgactccaagccggaggtgttcccaagtcatccggaagtccacaaactgttaacgaagttccgagatataccgcagatggacaagacaagagagatggttgaccagaagacattctatgacaacgaattgacaaaattcgggagcagatcaaaaagcaaagaagagacaaccgagaaaaggagatcactcaagttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

199

Amino Acids

23.89

Weight (kDa)

9.74

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	184
AccII	CGCG	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	433
AciI	CCGC	4 cut(s)	114, 116, 380, 473
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	184, 579
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	4 cut(s)	20, 239, 297, 560
Aor13HI	TCCGGA	1 cut(s)	433
AoxI	GGCC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	536
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	95, 130, 359
AsuII	TTCGAA	1 cut(s)	33
BbsI	GAAGAC	3 cut(s)	59, 148, 515
BccI	CCATC	2 cut(s)	472, 490
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	2 cut(s)	120, 234
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	4 cut(s)	20, 239, 297, 560
BisI	GCNGC	2 cut(s)	114, 381
BlsI	GCNGC	2 cut(s)	115, 382
Bme1390I	CCNGG	2 cut(s)	242, 278
BmrFI	CCNGG	2 cut(s)	242, 278
BpiI	GAAGAC	3 cut(s)	59, 148, 515
BpmI	CTGGAG	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	312, 575
BpuMI	CCSGG	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 579
Bse3DI	GCAATG	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	393, 430
BseLI	CCNNNNNNNGG	2 cut(s)	184, 579
BseMI	GCAATG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	277, 413, 434
BslI	CCNNNNNNNGG	2 cut(s)	184, 579
BsmAI	GTCTC	4 cut(s)	20, 239, 297, 560
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	33
Bsp13I	TCCGGA	1 cut(s)	433
Bsp143I	GATC	5 cut(s)	120, 234, 321, 548, 584
BspACI	CCGC	4 cut(s)	114, 116, 380, 473
BspANI	GGCC	1 cut(s)	113
BspEI	TCCGGA	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	5 cut(s)	120, 234, 321, 548, 584
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	2 cut(s)	295, 558
BstBI	TTCGAA	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	393, 430
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	5 cut(s)	123, 237, 324, 551, 587
BstMAI	GTCTC	4 cut(s)	20, 239, 297, 560
BstMBI	GATC	5 cut(s)	120, 234, 321, 548, 584
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	240, 276
BstUI	CGCG	1 cut(s)	116
BstV2I	GAAGAC	3 cut(s)	59, 148, 515
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	393, 430
CfoI	GCGC	1 cut(s)	12
Cfr42I	CCGCGG	1 cut(s)	117
CviJI	RGCY	4 cut(s)	113, 132, 148, 412
CviKI_1	RGCY	4 cut(s)	113, 132, 148, 412
DpnI	GATC	5 cut(s)	122, 236, 323, 550, 586
DpnII	GATC	5 cut(s)	120, 234, 321, 548, 584
Eam1104I	CTCTTC	2 cut(s)	295, 558
EarI	CTCTTC	2 cut(s)	295, 558
Eco31I	GGTCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	240
FaiI	YATR	6 cut(s)	125, 127, 206, 285, 470, 519
FbaI	TGATCA	2 cut(s)	120, 234
Fnu4HI	GCNGC	2 cut(s)	114, 381
FokI	GGATG	2 cut(s)	380, 417
Fsp4HI	GCNGC	2 cut(s)	114, 381
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	114, 381
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	3 cut(s)	277, 413, 434
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	2 cut(s)	453, 502
HindII	GTYRAC	2 cut(s)	453, 502
HinfI	GANTC	1 cut(s)	404
HpaI	GTTAAC	1 cut(s)	453
HpaII	CCGG	3 cut(s)	277, 413, 434
HphI	GGTGA	3 cut(s)	95, 130, 359
Hpy166II	GTNNAC	4 cut(s)	178, 442, 453, 502
Hpy188I	TCNGA	5 cut(s)	72, 200, 290, 464, 599
Hpy188III	TCNNGA	4 cut(s)	170, 311, 434, 541
Hpy8I	GTNNAC	4 cut(s)	178, 442, 453, 502
HpyAV	CCTTC	3 cut(s)	70, 259, 334
HpyCH4III	ACNGT	1 cut(s)	450
HspAI	GCGC	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	433
Ksp22I	TGATCA	2 cut(s)	120, 234
KspAI	GTTAAC	1 cut(s)	453
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	5 cut(s)	120, 234, 321, 548, 584
LmnI	GCTCC	2 cut(s)	280, 543
LpnPI	CCDG	8 cut(s)	134, 155, 227, 254, 290, 426, 447, 518
MaeIII	GTNAC	3 cut(s)	101, 187, 365
MalI	GATC	5 cut(s)	122, 236, 323, 550, 586
MboI	GATC	5 cut(s)	120, 234, 321, 548, 584
MboII	GAAGA	7 cut(s)	59, 85, 148, 312, 349, 520, 575
MluCI	AATT	3 cut(s)	264, 527, 536
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	2 cut(s)	145, 409
MroI	TCCGGA	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	277, 413, 434
MspR9I	CCNGG	2 cut(s)	242, 278
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	116
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	5 cut(s)	120, 234, 321, 548, 584
NmuCI	GTSAC	2 cut(s)	101, 365
NspV	TTCGAA	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	512
PflFI	GACNNNGTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	115, 382
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PsyI	GACNNNGTC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	374
SacII	CCGCGG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	2 cut(s)	114, 381
Sau3AI	GATC	5 cut(s)	120, 234, 321, 548, 584
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	242, 278
SetI	ASST	8 cut(s)	67, 81, 150, 156, 251, 345, 378, 420
Sfr303I	CCGCGG	1 cut(s)	117
SfuI	TTCGAA	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	327, 590
SmoI	CTYRAG	2 cut(s)	327, 590
Sse9I	AATT	3 cut(s)	264, 527, 536
SsiI	CCGC	4 cut(s)	114, 116, 380, 473
StyD4I	CCNGG	2 cut(s)	240, 276
TaaI	ACNGT	1 cut(s)	450
TaqI	TCGA	4 cut(s)	33, 144, 262, 310
TasI	AATT	3 cut(s)	264, 527, 536
TauI	GCSGC	2 cut(s)	116, 383
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TseFI	GTSAC	2 cut(s)	101, 365
Tsp45I	GTSAC	2 cut(s)	101, 365
Tth111I	GACNNNGTC	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.