Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

1486922 .. 1487569

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G020400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATGAAGAAAGTGAGTGAACTCAACAACCTTTGTGATGTTCCAGCATGTGCCATAATCTATAGCCTATATCATACTCAACATGAGATTTGGCCATCCTTTCTCCAAGTGCTACGCGTTCTTAAAAAATTTAAGACCATGCCGGAGATGGAACAAAGCAGAAAGATGGTGAACCAAGAAAGTCTTCTGAGGCAGAGGATTGAGAAAGCCAATGAACAACTGAAGAAACAAAGGAAGGAGAACAGGGAAAAGGAGATGAGAAGGGTTTTGAACATGGTTTCTTTGAATGATTTGGGTTGGCTGATTGACCAAAGCTTGAAGGACATTCGCGTCAAAATTAAGATTCTGAATTATGAGGAGGAGAACAAACAAGTCCAAGTAGAACCAACAGGACTGCTAGCTTTCGAAACTAACAGTATAGAGACAATGCAGAGGCATCCATGGCTCATGGGCATGAAGAACCCACAAGATCAGCATATGGAGGTAGGGGTTGGTGGTGGAGATGAGATGATTATGCCATTTTGGGGTCAAAATCACATTAATGCTATTTGGTCTAATAATGCCTTTTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

192

Amino Acids

22.59

Weight (kDa)

8.49

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccII	CGCG	2 cut(s)	117, 330
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	271, 286, 319
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	2 cut(s)	315, 401
AluI	AGCT	2 cut(s)	315, 401
Alw26I	GTCTC	1 cut(s)	416
AoxI	GGCC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	128
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	405
AsuNHI	GCTAGC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	176
BccI	CCATC	3 cut(s)	103, 142, 160
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	445
BmtI	GCTAGC	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	2 cut(s)	95, 436
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	371, 374
Bsh1236I	CGCG	2 cut(s)	117, 330
BshFI	GGCC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	469
Bsp19I	CCATGG	1 cut(s)	440
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	180
BspFNI	CGCG	2 cut(s)	117, 330
BspOI	GCTAGC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	95, 436
BstFNI	CGCG	2 cut(s)	117, 330
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNSI	RCATGY	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	2 cut(s)	117, 330
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	2 cut(s)	95, 436
Cac8I	GCNNGC	1 cut(s)	399
CseI	GACGC	1 cut(s)	319
CviAII	CATG	7 cut(s)	48, 83, 139, 274, 441, 448, 454
CviJI	RGCY	7 cut(s)	66, 94, 209, 301, 315, 401, 445
CviKI_1	RGCY	7 cut(s)	66, 94, 209, 301, 315, 401, 445
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	7 cut(s)	51, 86, 142, 277, 444, 451, 457
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	7 cut(s)	47, 82, 138, 273, 440, 447, 453
FauNDI	CATATG	1 cut(s)	477
FokI	GGATG	2 cut(s)	82, 423
FspBI	CTAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	319
Hin1II	CATG	7 cut(s)	51, 86, 142, 277, 444, 451, 457
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	20, 172
Hpy188I	TCNGA	2 cut(s)	189, 348
Hpy8I	GTNNAC	2 cut(s)	20, 172
HpyAV	CCTTC	3 cut(s)	229, 255, 313
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	7 cut(s)	51, 86, 142, 277, 444, 451, 457
Kzo9I	GATC	1 cut(s)	469
LpnPI	CCDG	4 cut(s)	57, 156, 229, 375
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	398
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	4 cut(s)	19, 176, 235, 469
MlsI	TGGCCA	1 cut(s)	94
MluCI	AATT	3 cut(s)	128, 336, 349
MluI	ACGCGT	1 cut(s)	115
MluNI	TGGCCA	1 cut(s)	94
MnlI	CCTC	6 cut(s)	183, 189, 349, 352, 426, 475
Mox20I	TGGCCA	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	94
MseI	TTAA	4 cut(s)	123, 132, 339, 540
MslI	CAYNNNNRTG	2 cut(s)	452, 540
Msp20I	TGGCCA	1 cut(s)	94
MspI	CCGG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	117, 330
MwoI	GCNNNNNNNGC	1 cut(s)	442
NcoI	CCATGG	1 cut(s)	440
NdeI	CATATG	1 cut(s)	477
NdeII	GATC	1 cut(s)	469
NheI	GCTAGC	1 cut(s)	397
NlaIII	CATG	7 cut(s)	51, 86, 142, 277, 444, 451, 457
NspI	RCATGY	1 cut(s)	51
NspV	TTCGAA	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	343
PshBI	ATTAAT	1 cut(s)	540
RseI	CAYNNNNRTG	2 cut(s)	452, 540
SaqAI	TTAA	4 cut(s)	123, 132, 339, 540
Sau3AI	GATC	1 cut(s)	469
SetI	ASST	4 cut(s)	33, 317, 403, 486
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	452, 540
Sse9I	AATT	3 cut(s)	128, 336, 349
SspMI	CTAG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	416
TaqI	TCGA	1 cut(s)	405
TasI	AATT	3 cut(s)	128, 336, 349
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	4 cut(s)	123, 132, 339, 540
Tru9I	TTAA	4 cut(s)	123, 132, 339, 540
TspDTI	ATGAA	3 cut(s)	20, 228, 470
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.