Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

35728295 .. 35729143

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG342400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTAGAAGGAAGGTGAGACTGCACTACGTTGCCAATGAGAGTTCCCGACGAACGACATTTAGAAAAAGAAAGAAGGGTCTTCTGAAGAAGGTGGGAGAGATAACCACTCTCTGTGACATCAAGGCCGCGGTGATCATCTACAGCCCTTTTGATGGCGAGCCGGAGGTGTTCCCAAGTCTTCCGGAAGTCAACGAACTGCTGACGAAGTTCCGAGATATGCCGCAGATGGACAAGACAAGAAAGATGGTCGACCAAGAGACATTCTTAATACAACGAATCGACAAAGTCCGGGAGCAGATCAGAAAGCTGAAAAGAGACAACCGAGAAAAGGAGATCACTCAAGTCATGTTCGGTTGTTTGAAGGGGAGAACACTCTCTGACCTGGAAATGAAGGATCTGCAAGACCTCAATTTTATCATCGAACGCAACCTCAGGGAGCTTGAAATCAAACAACGGGCTGCCGATGAGCAGAAGCAGGAGGAAAACCAGGAGAACCAGCTCAACCAGGTGCAAGCTGAATCGATTGCGGTGGAGCTCGGCCTGACGACGAGGAATGCATTTGGGGAGGGAACTAGCAGAGGCGTGCAGCAACAACACCACCAACCCGCGATGGAGGCGCAGAGCATGGAGCAGTGGCAGTACCAAATGATGCAGGTTGCAGCTCAGAGGCAGCAACATCAGCAGTTGTTCCAGCAACAACCCTGGTTCCTGGACATCATGAACCCACCACCGCCCCAAATGAGGGACTTCTTGCACCCACTACCACCGCTTCAGCGAGGAGGGTTCAGAGACTATAACAGTGACAATGCTACATGCCCAAACAACTCTTCATTTCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

282

Amino Acids

33.2

Weight (kDa)

9.08

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 54	7.3e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	131, 611
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	7 cut(s)	129, 131, 224, 530, 609, 734, 770
AclWI	GGATC	1 cut(s)	405
AcuI	CTGAAG	2 cut(s)	107, 758
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	4 cut(s)	155, 331, 744, 745
AgsI	TTSAA	2 cut(s)	364, 446
AjnI	CCWGG	5 cut(s)	384, 489, 507, 704, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	814, 846
AluBI	AGCT	6 cut(s)	310, 442, 502, 518, 538, 665
AluI	AGCT	6 cut(s)	310, 442, 502, 518, 538, 665
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	4 cut(s)	13, 254, 312, 786
AlwI	GGATC	1 cut(s)	405
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	126, 541
ApeKI	GCWGC	4 cut(s)	461, 589, 662, 673
AspLEI	GCGC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	28, 145
AxyI	CCTNAGG	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	74, 173
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	4 cut(s)	448, 601, 674, 685
BccI	CCATC	4 cut(s)	149, 223, 241, 607
BciT130I	CCWGG	5 cut(s)	386, 491, 509, 706, 713
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	4 cut(s)	13, 254, 312, 786
BfaI	CTAG	2 cut(s)	6, 576
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	646
BisI	GCNGC	6 cut(s)	129, 224, 462, 590, 663, 674
BlsI	GCNGC	6 cut(s)	130, 225, 463, 591, 664, 675
Bme1390I	CCNGG	6 cut(s)	293, 386, 491, 509, 706, 713
BmiI	GGNNCC	1 cut(s)	710
BmrFI	CCNGG	6 cut(s)	293, 386, 491, 509, 706, 713
BmsI	GCATC	1 cut(s)	642
BpiI	GAAGAC	2 cut(s)	74, 173
BpuEI	CTTGAG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	129, 704
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 331, 744, 745
Bse21I	CCTNAGG	1 cut(s)	434
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	5 cut(s)	386, 491, 509, 706, 713
BseCI	ATCGAT	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	129, 704
BseLI	CCNNNNNNNGG	4 cut(s)	155, 331, 744, 745
BseMII	CTCAG	2 cut(s)	448, 680
BseRI	GAGGAG	1 cut(s)	795
BseXI	GCAGC	4 cut(s)	448, 601, 674, 685
BsgI	GTGCAG	2 cut(s)	8, 608
Bsh1236I	CGCG	2 cut(s)	131, 611
BshFI	GGCC	2 cut(s)	128, 543
BshVI	ATCGAT	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	3 cut(s)	164, 185, 292
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	4 cut(s)	155, 331, 744, 745
BsmAI	GTCTC	4 cut(s)	13, 254, 312, 786
BsmFI	GGGAC	1 cut(s)	761
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	128, 543
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	135, 300, 336, 397
BspACI	CCGC	7 cut(s)	129, 131, 224, 530, 609, 734, 770
BspANI	GGCC	2 cut(s)	128, 543
BspCNI	CTCAG	2 cut(s)	447, 679
BspDI	ATCGAT	1 cut(s)	524
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	131, 611
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	710
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	129, 704
BssMI	GATC	4 cut(s)	135, 300, 336, 397
Bst2UI	CCWGG	5 cut(s)	386, 491, 509, 706, 713
Bst4CI	ACNGT	1 cut(s)	803
Bst6I	CTCTTC	1 cut(s)	835
BstC8I	GCNNGC	3 cut(s)	161, 516, 587
BstDEI	CTNAG	2 cut(s)	434, 666
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	2 cut(s)	131, 611
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	4 cut(s)	138, 303, 339, 400
BstMAI	GTCTC	4 cut(s)	13, 254, 312, 786
BstMBI	GATC	4 cut(s)	135, 300, 336, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 682
BstNI	CCWGG	5 cut(s)	386, 491, 509, 706, 713
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	6 cut(s)	291, 384, 489, 507, 704, 711
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	131, 611
BstV1I	GCAGC	4 cut(s)	448, 601, 674, 685
BstV2I	GAAGAC	2 cut(s)	74, 173
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	128, 543
BsuTUI	ATCGAT	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	626
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	2 cut(s)	641, 808
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	3 cut(s)	161, 516, 587
CciI	TCATGA	1 cut(s)	720
CfoI	GCGC	1 cut(s)	622
Cfr42I	CCGCGG	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	4 cut(s)	349, 628, 721, 816
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	434, 666
DpnI	GATC	4 cut(s)	137, 302, 338, 399
DpnII	GATC	4 cut(s)	135, 300, 336, 397
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
Ecl136II	GAGCTC	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	540
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	107, 758
Eco81I	CCTNAGG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	5 cut(s)	384, 489, 507, 704, 711
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	540
FaeI	CATG	4 cut(s)	352, 631, 724, 819
FaiI	YATR	6 cut(s)	221, 350, 629, 722, 798, 817
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	4 cut(s)	348, 627, 720, 815
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	6 cut(s)	129, 224, 462, 590, 663, 674
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	6 cut(s)	129, 224, 462, 590, 663, 674
FspBI	CTAG	2 cut(s)	6, 576
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	6 cut(s)	129, 224, 462, 590, 663, 674
HaeIII	GGCC	2 cut(s)	128, 543
HapII	CCGG	3 cut(s)	164, 185, 292
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	4 cut(s)	352, 631, 724, 819
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	2 cut(s)	193, 253
HindII	GTYRAC	2 cut(s)	193, 253
HinfI	GANTC	2 cut(s)	279, 521
HpaII	CCGG	3 cut(s)	164, 185, 292
HphI	GGTGA	2 cut(s)	28, 145
Hpy166II	GTNNAC	2 cut(s)	193, 253
Hpy188I	TCNGA	6 cut(s)	87, 215, 305, 382, 669, 791
Hpy188III	TCNNGA	3 cut(s)	48, 185, 721
Hpy8I	GTNNAC	2 cut(s)	193, 253
Hpy99I	CGWCG	2 cut(s)	54, 553
HpyAV	CCTTC	6 cut(s)	3, 7, 70, 85, 358, 388
HpyCH4III	ACNGT	1 cut(s)	803
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	8 cut(s)	25, 403, 514, 560, 589, 655, 662, 757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 682
HpyF3I	CTNAG	2 cut(s)	434, 666
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	352, 631, 724, 819
HspAI	GCGC	1 cut(s)	620
Kpn2I	TCCGGA	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	135
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	135, 300, 336, 397
LmnI	GCTCC	4 cut(s)	295, 439, 535, 631
Lsp1109I	GCAGC	4 cut(s)	448, 601, 674, 685
LweI	GCATC	1 cut(s)	642
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	2 cut(s)	6, 576
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	116, 803
MalI	GATC	4 cut(s)	137, 302, 338, 399
MboI	GATC	4 cut(s)	135, 300, 336, 397
MboII	GAAGA	4 cut(s)	74, 100, 173, 822
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	1 cut(s)	412
Mph1103I	ATGCAT	1 cut(s)	562
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	3 cut(s)	164, 185, 292
MspR9I	CCNGG	6 cut(s)	293, 386, 491, 509, 706, 713
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	5 cut(s)	386, 491, 509, 706, 713
MvnI	CGCG	2 cut(s)	131, 611
MwoI	GCNNNNNNNGC	2 cut(s)	617, 682
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	4 cut(s)	135, 300, 336, 397
NlaIII	CATG	4 cut(s)	352, 631, 724, 819
NlaIV	GGNNCC	1 cut(s)	710
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	116, 803
NsiI	ATGCAT	1 cut(s)	562
NspI	RCATGY	1 cut(s)	819
PagI	TCATGA	1 cut(s)	720
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	279, 521
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	2 cut(s)	291, 711
PkrI	GCNGC	6 cut(s)	130, 225, 463, 591, 664, 675
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	5 cut(s)	384, 489, 507, 704, 711
PspGI	CCWGG	5 cut(s)	384, 489, 507, 704, 711
PspN4I	GGNNCC	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
SacI	GAGCTC	1 cut(s)	540
SacII	CCGCGG	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	6 cut(s)	129, 224, 462, 590, 663, 674
Sau3AI	GATC	4 cut(s)	135, 300, 336, 397
ScrFI	CCNGG	6 cut(s)	293, 386, 491, 509, 706, 713
SduI	GDGCHC	1 cut(s)	540
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	642
SfcI	CTRYAG	1 cut(s)	142
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	7 cut(s)	129, 131, 224, 530, 609, 734, 770
SspMI	CTAG	2 cut(s)	6, 576
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	6 cut(s)	291, 384, 489, 507, 704, 711
TaaI	ACNGT	1 cut(s)	803
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	4 cut(s)	252, 282, 423, 524
TasI	AATT	1 cut(s)	412
TauI	GCSGC	2 cut(s)	131, 226
TfiI	GAWTC	2 cut(s)	279, 521
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	2 cut(s)	641, 808
TseFI	GTSAC	2 cut(s)	116, 803
TseI	GCWGC	4 cut(s)	461, 589, 662, 673
Tsp45I	GTSAC	2 cut(s)	116, 803
TspDTI	ATGAA	3 cut(s)	407, 737, 822
TspRI	CASTG	2 cut(s)	641, 808
Tth111I	GACNNNGTC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	819
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	6, 576
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.