Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

26057419 .. 26058244

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0188500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTGATGGATGGAAGAATTGTGGCTGTTAAAAAGTCAAAAATTGTAGACAAGGCAAAACTTTCAGAATTCATCAATGAGGTTGTCATTCTTTCTCAAATCAACCACAGAAATATCGTTCAACTATTGGGTTGCTGTTTGGAGACAGAAGTTCCTCTTCTGGTATATGAATTTATACCCAATGGAAACTTATCTCAGTACATTCATGAACAGACCGAAGAATTTCCACTTACATGGGAGATTCGTTTACGAATTGCTACAGAAATTGCAGGAGCTCTTTCCTACTTACATACTTCAGCTTCTTTTCCTGTTTATCACAGAGACATCAAGTCCATGAACATACTCTTAGATGACAAATACAGAGCAAAAATTGCAGACTTTGGAACTTCAAGATTAGTTGCCATTGATCAAACTCACCTGACAACTGAAGATTCTCTATTTGACATTCTTGATGCTCGAGTTGTGAGTGAAGGCTCTAAAGATGGTATTTTGGCAGTCGCTAATCTTGCAAATCGATGCTTAAATTTGAATGGAAGAAAGCGTACTACGATGAGAGAGGTCACAGCAGAGTTGGAGGCCATCCAATTATCTGATCGAGAAACCTATCGGCGCTCAACAAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

208

Amino Acids

23.61

Weight (kDa)

6.23

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 138	4.1e-26	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	7 - 144	3.6e-29	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AcsI	RAATTY	4 cut(s)	68, 170, 221, 523
AcuI	CTGAAG	2 cut(s)	279, 447
AfaI	GTAC	2 cut(s)	200, 544
AgsI	TTSAA	3 cut(s)	122, 390, 529
AhdI	GACNNNNNGTC	1 cut(s)	328
AluBI	AGCT	2 cut(s)	275, 299
AluI	AGCT	2 cut(s)	275, 299
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	137, 315
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	1 cut(s)	576
ApoI	RAATTY	4 cut(s)	68, 170, 221, 523
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	277
BarI	GAAGNNNNNNTAC	2 cut(s)	526, 558
Bbv12I	GWGCWC	1 cut(s)	277
BccI	CCATC	3 cut(s)	5, 476, 587
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	137, 315
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	613
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	442, 506
Bsa29I	ATCGAT	1 cut(s)	514
BseCI	ATCGAT	1 cut(s)	514
BseGI	GGATG	2 cut(s)	16, 579
BseMII	CTCAG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	578
BshVI	ATCGAT	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	456
BsmAI	GTCTC	2 cut(s)	137, 315
BsnI	GGCC	1 cut(s)	578
BsoBI	CYCGRG	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	406, 592
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	205
BssMI	GATC	2 cut(s)	406, 592
Bst4CI	ACNGT	1 cut(s)	624
Bst6I	CTCTTC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	195, 346
BstF5I	GGATG	2 cut(s)	16, 579
BstH2I	RGCGCY	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	2 cut(s)	409, 595
BstMAI	GTCTC	2 cut(s)	137, 315
BstMBI	GATC	2 cut(s)	406, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 506
BstSFI	CTRYAG	1 cut(s)	258
BstXI	CCANNNNNNTGG	1 cut(s)	234
Bsu15I	ATCGAT	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	578
BsuTUI	ATCGAT	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	16, 579
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	612
ClaI	ATCGAT	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	199, 543
CviAII	CATG	3 cut(s)	206, 234, 334
CviJI	RGCY	5 cut(s)	26, 275, 299, 474, 578
CviKI_1	RGCY	5 cut(s)	26, 275, 299, 474, 578
CviQI	GTAC	2 cut(s)	199, 543
DdeI	CTNAG	2 cut(s)	195, 346
DpnI	GATC	2 cut(s)	408, 594
DpnII	GATC	2 cut(s)	406, 592
DriI	GACNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	162
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	2 cut(s)	279, 447
Eco88I	CYCGRG	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	3 cut(s)	209, 237, 337
FaiI	YATR	8 cut(s)	166, 168, 176, 207, 235, 291, 335, 341
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FatI	CATG	3 cut(s)	205, 233, 333
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	2 cut(s)	23, 566
FriOI	GRGCYC	1 cut(s)	277
GlaI	GCGC	1 cut(s)	611
HaeII	RGCGCY	1 cut(s)	613
HaeIII	GGCC	1 cut(s)	578
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	3 cut(s)	209, 237, 337
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HinfI	GANTC	2 cut(s)	241, 431
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	49, 248
Hpy188I	TCNGA	2 cut(s)	67, 592
Hpy188III	TCNNGA	4 cut(s)	206, 390, 449, 596
Hpy8I	GTNNAC	2 cut(s)	49, 248
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	624
HpyCH4V	TGCA	3 cut(s)	269, 374, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 506
HpyF3I	CTNAG	2 cut(s)	195, 346
Hsp92II	CATG	3 cut(s)	209, 237, 337
HspAI	GCGC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	406, 592
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	4 cut(s)	146, 255, 321, 431
LweI	GCATC	2 cut(s)	442, 506
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	2 cut(s)	408, 594
MboI	GATC	2 cut(s)	406, 592
MboII	GAAGA	5 cut(s)	27, 149, 230, 440, 546
MhlI	GDGCHC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	4 cut(s)	73, 165, 550, 568
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	2 cut(s)	30, 521
MslI	CAYNNNNRTG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	371, 506
NdeII	GATC	2 cut(s)	406, 592
NlaIII	CATG	3 cut(s)	209, 237, 337
NmuCI	GTSAC	1 cut(s)	559
PaeR7I	CTCGAG	1 cut(s)	456
PagI	TCATGA	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	241, 431
Psp124BI	GAGCTC	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	456
RsaI	GTAC	2 cut(s)	200, 544
RsaNI	GTAC	2 cut(s)	199, 543
RseI	CAYNNNNRTG	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	30, 521
Sau3AI	GATC	2 cut(s)	406, 592
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	6 cut(s)	84, 277, 301, 420, 561, 605
SfaNI	GCATC	2 cut(s)	442, 506
SfcI	CTRYAG	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	456
SlaI	CTCGAG	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	624
TaqI	TCGA	3 cut(s)	457, 514, 595
TaqII	GACCGA	1 cut(s)	230
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	241, 431
Tru1I	TTAA	2 cut(s)	30, 521
Tru9I	TTAA	2 cut(s)	30, 521
TseFI	GTSAC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	5 cut(s)	61, 183, 194, 222, 350
XapI	RAATTY	4 cut(s)	68, 170, 221, 523
XhoI	CTCGAG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.