Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

40378730 .. 40378936

Gene Structure 207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57375

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGATGAAGAAGTTGAGTGAATTGAACACTCTCTGTGGAATTGATGCATGTGCTATTGTTTATAGCTCATTTGATTCTCAACCCGAGGTTTGGCCTTCTACTTCTAGTGTTGAAAAAGTTTTAAAACAGTTCAAGAATATGCTTATGACTGAGAAGAGTAGGAAGATGTTGAGTCAAGAAAGCTATATGAGGGGGGATGATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

68

Amino Acids

7.79

Weight (kDa)

6.16

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	1 - 23	9.1e-07	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	25, 113, 133
AluBI	AGCT	2 cut(s)	66, 183
AluI	AGCT	2 cut(s)	66, 183
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	83
BfaI	CTAG	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	90
BsnI	GGCC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	202
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	3 cut(s)	66, 94, 183
CviKI_1	RGCY	3 cut(s)	66, 94, 183
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraI	TTTAAA	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	83
EcoT22I	ATGCAT	1 cut(s)	49
FaeI	CATG	1 cut(s)	51
FaiI	YATR	6 cut(s)	49, 63, 140, 146, 186, 188
FatI	CATG	1 cut(s)	47
FspBI	CTAG	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	51
HinfI	GANTC	2 cut(s)	74, 172
Hpy188III	TCNNGA	2 cut(s)	133, 176
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	199
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	105
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	19, 166, 175
MluCI	AATT	2 cut(s)	20, 39
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	79, 183
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	1 cut(s)	122
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	51
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	181
SetI	ASST	3 cut(s)	68, 90, 185
SfaNI	GCATC	1 cut(s)	34
SgeI	CNNG	6 cut(s)	60, 95, 97, 117, 145, 188
Sse9I	AATT	2 cut(s)	20, 39
SspMI	CTAG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	129
TasI	AATT	2 cut(s)	20, 39
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	20
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.