Rorug01G0188300
MADS Family

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000249
Physical Location & Seq
Reverse (-)
26030908 .. 26034461
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0188300.1

Sequence Viewer

Length: 582 bp
ATGGCTACTGCAGTGTCTAACTCAACCACTAGTAACACAGAAAGTAATGCATCCACTTCAAAATTTGAAGAGGAACTTAAAGTTGCTTCAAGGTTGCGAAAATTTGCTTTTAACGATCTTAAATTGGCAACAAGAAATTTCAGACCTAAAAGTCTTCTTGGTGAAGGTGGTTTTGGTTGTGTGTTCAAGGGGTGGATAGAAGAAAATGGAACTGCTCCAGTCAAACCTGGCACAGGACTTACTGTTGTGGTTAAAACTCTTAATCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTCCTTGGTGACCTTGTCCATCCAAACTTGGTAAAACTTATTGGATACTGCATTGAAGATGATCAAAGGCTGCTAGTGTATGAGTTCATGCCTCGAGGGAGCTTGGAGAACCACCTATTTAGGAGGTCCCTGCCTCTTCCATGGTCTATTAGAATGAAAATTGCATTGGGTGCGGCAAAAGGTCTTGCTTTTCTTCATGAGGAGGCAGAAAGACCTGTGATTTATCGTGACTTTAAAACCTCCAACATCTTATTGGATGCAGTATGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AP2

Protein Analysis

193

Amino Acids

21.48

Weight (kDa)

8.43

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 49 - 189 1.6e-20 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 51 - 189 1.9e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 150
AbsI CCTCGAGG 1 cut(s) 402
AciI CCGC 1 cut(s) 482
AcsI RAATTY 4 cut(s) 62, 101, 136, 307
AcuI CTGAAG 2 cut(s) 260, 321
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 5 cut(s) 60, 68, 90, 187, 365
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 4 cut(s) 156, 188, 458, 490
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 402
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 4 cut(s) 62, 101, 136, 307
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 173, 329
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 366
BccI CCATC 2 cut(s) 263, 336
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 1 cut(s) 370
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 2 cut(s) 30, 383
BfmI CTRYAG 1 cut(s) 9
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 2 cut(s) 380, 483
BlsI GCNGC 2 cut(s) 381, 484
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 59, 556
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 313, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 313, 449
BseGI GGATG 3 cut(s) 50, 328, 571
BseLI CCNNNNNNNGG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 402
Bsp143I GATC 2 cut(s) 115, 370
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 1 cut(s) 482
BspHI TCATGA 2 cut(s) 265, 505
BspLI GGNNCC 1 cut(s) 437
BspMAI CTGCAG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 313, 449
BssMI GATC 2 cut(s) 115, 370
BssT1I CCWWGG 2 cut(s) 313, 449
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 63, 450
BstAPI GCANNNNNTGC 2 cut(s) 479, 575
BstC8I GCNNGC 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 449
BstEII GGTNACC 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 3 cut(s) 50, 328, 571
BstKTI GATC 2 cut(s) 118, 373
BstMBI GATC 2 cut(s) 115, 370
BstMWI GCNNNNNNNGC 2 cut(s) 479, 575
BstNI CCWGG 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 3 cut(s) 50, 328, 571
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 297
CciI TCATGA 2 cut(s) 265, 505
Cfr13I GGNCC 1 cut(s) 435
CviAII CATG 4 cut(s) 266, 397, 450, 506
CviJI RGCY 6 cut(s) 5, 274, 295, 299, 379, 411
CviKI_1 RGCY 6 cut(s) 5, 274, 295, 299, 379, 411
DpnI GATC 2 cut(s) 117, 372
DpnII GATC 2 cut(s) 115, 370
DraI TTTAAA 1 cut(s) 544
DrdI GACNNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 63, 450
EarI CTCTTC 2 cut(s) 63, 450
Eco130I CCWWGG 2 cut(s) 313, 449
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 2 cut(s) 260, 321
Eco88I CYCGRG 1 cut(s) 402
Eco91I GGTNACC 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 435
EcoO65I GGTNACC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 313, 449
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 313, 449
FaeI CATG 4 cut(s) 269, 400, 453, 509
FaiI YATR 7 cut(s) 267, 285, 390, 398, 451, 507, 574
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 1 cut(s) 421
FatI CATG 4 cut(s) 265, 396, 449, 505
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 380, 483
FokI GGATG 3 cut(s) 37, 315, 578
Fsp4HI GCNGC 2 cut(s) 380, 483
FspBI CTAG 2 cut(s) 30, 383
GluI GCNGC 2 cut(s) 380, 483
GsuI CTGGAG 1 cut(s) 201
Hin1II CATG 4 cut(s) 269, 400, 453, 509
HphI GGTGA 2 cut(s) 173, 329
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 266, 506, 536
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 5 cut(s) 11, 50, 360, 473, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 575
Hsp92II CATG 4 cut(s) 269, 400, 453, 509
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 115, 370
LmnI GCTCC 2 cut(s) 220, 408
LpnPI CCDG 8 cut(s) 213, 219, 231, 240, 263, 281, 452, 537
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 2 cut(s) 59, 556
MaeI CTAG 2 cut(s) 30, 383
MaeIII GTNAC 3 cut(s) 32, 317, 536
MalI GATC 2 cut(s) 117, 372
MboI GATC 2 cut(s) 115, 370
MboII GAAGA 6 cut(s) 80, 146, 212, 377, 437, 494
MluCI AATT 6 cut(s) 62, 101, 122, 136, 307, 468
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 8 cut(s) 64, 398, 411, 426, 453, 502, 505, 559
Mph1103I ATGCAT 1 cut(s) 52
MseI TTAA 7 cut(s) 78, 111, 120, 252, 261, 543, 580
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 479, 575
NcoI CCATGG 1 cut(s) 449
NdeII GATC 2 cut(s) 115, 370
NlaIII CATG 4 cut(s) 269, 400, 453, 509
NlaIV GGNNCC 1 cut(s) 437
NmuCI GTSAC 2 cut(s) 317, 536
NsiI ATGCAT 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 402
PagI TCATGA 2 cut(s) 265, 505
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 381, 484
PpuMI RGGWCCY 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 317
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 1 cut(s) 435
PspPPI RGGWCCY 1 cut(s) 435
PspXI VCTCGAGB 1 cut(s) 402
PstI CTGCAG 1 cut(s) 13
PsyI GACNNNGTC 1 cut(s) 323
SaqAI TTAA 7 cut(s) 78, 111, 120, 252, 261, 543, 580
SatI GCNGC 2 cut(s) 380, 483
Sau3AI GATC 2 cut(s) 115, 370
Sau96I GGNCC 1 cut(s) 435
ScrFI CCNGG 1 cut(s) 228
SfaNI GCATC 2 cut(s) 59, 556
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 6 cut(s) 62, 101, 122, 136, 307, 468
SsiI CCGC 1 cut(s) 482
SspMI CTAG 2 cut(s) 30, 383
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 2 cut(s) 313, 449
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 403
TasI AATT 6 cut(s) 62, 101, 122, 136, 307, 468
TauI GCSGC 1 cut(s) 485
Tru1I TTAA 7 cut(s) 78, 111, 120, 252, 261, 543, 580
Tru9I TTAA 7 cut(s) 78, 111, 120, 252, 261, 543, 580
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 317, 536
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 2 cut(s) 317, 536
TspDTI ATGAA 3 cut(s) 385, 479, 494
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 231
XapI RAATTY 4 cut(s) 62, 101, 136, 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 402
XspI CTAG 2 cut(s) 30, 383
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.