Rorug07G0216000
MADS Family

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
19189190 .. 19198525
9336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0216000.1

Sequence Viewer

Length: 1788 bp
ATGGAAGCCAAAACACTCCAGTATAGTTTTGCAAACATGGCTTCCACCACCACCACAACTCAAACTCCTCCCAGCAACACAAACACCAGACTTTGCTTCTCCAACTATCTCCAATCCCTGTCCCAAACACCCCACAGGCTCAGAAAGAGAATGCTTGCCACCTGGACCCCAGACCAGGAGCTCAACCAAGTGAGGCAAAGGTCAGGGGCTGATATGAAGAGAAAACTCAAGTGGTATGATCTCATGGCTCTTGGTGTTGGAGGCATGCTTGGTGTTGGAGTCTTTGTCACAACAGGTTCTGTAGCCCACAAAACAGCCGGTCCTTCTGTCTTCATATCCTATATCATTGCAGGAATATCAGCCCTTCTTTCTTCCTTGTGTTACACTGAATTTTCTGTTCAAATTCCAGTTGCTGGTGGTGCTTTTAGTTATCTCAGAGTGACTTTTGGAGAATTTGTCGGTTATTTTGCTGGGGCAAATATACTCATGGAGTATGTATTGTCAAATGCTGCTGTGGCGAGGAGTTTTACTGAGTATTTATCCTCTGCATTTGGAGAAGATGATCCAAGGACATGGAGAGTAGAAGTGGATGGGTTAGTAAAGGGCTATAATATGTTGGACTTCCCAGCTGTTGCTCTTATTCTACTTCTCACTTTCTGCCTTTGCCATAGCACAAAGGAAAGCTCCACACTGAACCTTGTTATGACAGTGTTTCATGTGGTGTTCTTTGGGTTTATTATAATTGCTGGTTTCTGCATTGGGAGCACCAACAACTTGGTGAAGCCTAAGGGACTAGCACCTTTTGGTGTTAGAGGAGTTCTTGATGGGGCAGCTATAGTTTATTTCAGTTACATCGGCTACGATTCAGCTTCAACCATGGCCGAAGAGATCCAAAACCCTTCGCAGAGCCTGCCCGTCGGCATCATTGGTTCCGTTGTCATTACCTCCATGCTTTATTGCCTTATGGCCTTGTCCTTGTGTTTGATGGTTCCTTACAACAAGATATCAGAGAGAGTATCATTTTCAGTGGCTTTCAGACAGATTGGTTGGGACTGGGCAAGTAACGTGGTTGCGGCTGGTGCAAGCTTGGGGATTGTTGCTTCACTCTTGGTTGCCATGTTAGGCCAAGCCAGGTACCTTTGTGTTATTGGAAGGGCGCGGCTAGTGCCATCCTGGTTAGCCAAGGTGCATCCTTCAACAGGCACTCCACTGAATGCCACACTCTTCCTCGGACTCTGCACAGCATCAATTGCACTCTTCACTGACCTCGAAATAGTGATTGAAATGATCTCCATCGGCACCCTCTTGGTGTTCTACCTTGTGGCCAATGCTCTCATTTATCGTCGATATGTGATCATCACCAACAACCCCCCATTTCAAACTCTCTTGTTCCTCTTCCTCCTTTCATCTAGTGCCATCGGCTTTTCCGTGTCCTGGAAGCTTAACCAACAACGCTGGGGGTTACCGCTTTTCGGAATGTCAACAGTTACCATCATTGCCTTCTTCAACTACATGGTACCTTGTGTTTGCCATCCCACTGGGTGGTCGATGCCATTCATGCCATGGCCGGCTGCACTATCTATCTTCCTTAATGTGTTTCTCATGACCACACTAAAGAAGTTCTCATTCGAAAGGTTTGCCATATGGGCATGTTTCATAACATTGTTCTATCTACTGTATGGTGTTCACTCGACTTATAAGGCAGAGGAGAGGGAGAGTACTGGTGTTGATGAAGTGAATCCAAGCTCAGCAGTGCAACAAATAAAGCTAGATATTCAAGTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

595

Amino Acids

65.43

Weight (kDa)

8.71

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 76 - 520 8.9e-49 Amino acid permease
AA_permease PF00324 82 - 461 1.2e-25 Amino acid permease
AA_permease_C PF13906 515 - 564 3.6e-10 C-terminus of AA_permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 740, 1698
Acc65I GGTACC 2 cut(s) 1134, 1516
AccB1I GGYRCC 3 cut(s) 1134, 1298, 1516
AccB7I CCANNNNNTGG 2 cut(s) 413, 1542
AccII CGCG 1 cut(s) 1159
AciI CCGC 3 cut(s) 1073, 1159, 1466
AclWI GGATC 2 cut(s) 557, 883
AcoI YGGCCR 3 cut(s) 879, 1323, 1565
AcsI RAATTY 3 cut(s) 389, 402, 452
AdeI CACNNNGTG 1 cut(s) 1542
AfaI GTAC 3 cut(s) 1136, 1518, 1720
AfiI CCNNNNNNNGG 6 cut(s) 175, 413, 1199, 1434, 1472, 1542
AgsI TTSAA 7 cut(s) 401, 873, 1197, 1283, 1379, 1507, 1778
AjnI CCWGG 5 cut(s) 161, 174, 1130, 1172, 1433
AluBI AGCT 9 cut(s) 181, 629, 684, 833, 869, 1086, 1441, 1746, 1768
AluI AGCT 9 cut(s) 181, 629, 684, 833, 869, 1086, 1441, 1746, 1768
Alw21I GWGCWC 2 cut(s) 183, 767
AlwI GGATC 2 cut(s) 557, 883
AlwNI CAGNNNCTG 4 cut(s) 209, 299, 413, 910
AoxI GGCC 5 cut(s) 879, 966, 1123, 1323, 1565
ApeKI GCWGC 3 cut(s) 509, 830, 1571
ApoI RAATTY 3 cut(s) 389, 402, 452
Asp718I GGTACC 2 cut(s) 1134, 1516
AspLEI GCGC 1 cut(s) 1159
AspS9I GGNCC 2 cut(s) 165, 320
AsuHPI GGTGA 2 cut(s) 790, 1351
AsuII TTCGAA 1 cut(s) 1629
AvaII GGWCC 2 cut(s) 165, 320
AxyI CCTNAGG 1 cut(s) 786
BaeI ACNNNNGTAYC 2 cut(s) 1126, 1159
BalI TGGCCA 1 cut(s) 1325
BanI GGYRCC 3 cut(s) 1134, 1298, 1516
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 183, 767
BbvI GCAGC 3 cut(s) 496, 842, 1558
BccI CCATC 8 cut(s) 584, 818, 979, 1177, 1301, 1424, 1499, 1539
BcgI CGANNNNNNTGC 2 cut(s) 1619, 1653
BciT130I CCWGG 5 cut(s) 163, 176, 1132, 1174, 1435
BclI TGATCA 1 cut(s) 1353
BfaI CTAG 4 cut(s) 794, 1163, 1410, 1769
BfmI CTRYAG 2 cut(s) 300, 834
BglI GCCNNNNNGGC 1 cut(s) 1646
BisI GCNGC 5 cut(s) 510, 831, 1074, 1160, 1572
BlpI GCTNAGC 1 cut(s) 1747
BlsI GCNGC 5 cut(s) 511, 832, 1075, 1161, 1573
BmcAI AGTACT 1 cut(s) 1720
Bme1390I CCNGG 5 cut(s) 163, 176, 1132, 1174, 1435
Bme18I GGWCC 2 cut(s) 165, 320
BmgT120I GGNCC 2 cut(s) 165, 320
BmiI GGNNCC 6 cut(s) 167, 931, 990, 1136, 1300, 1518
BmrFI CCNGG 5 cut(s) 163, 176, 1132, 1174, 1435
BmrI ACTGGG 2 cut(s) 1063, 1548
BmsI GCATC 4 cut(s) 930, 1198, 1253, 1539
BmuI ACTGGG 2 cut(s) 1063, 1548
BpiI GAAGAC 1 cut(s) 322
Bpu1102I GCTNAGC 1 cut(s) 1747
Bpu14I TTCGAA 1 cut(s) 1629
BpuEI CTTGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 1292
BsaJI CCNNGG 5 cut(s) 566, 876, 1182, 1228, 1562
BsaXI ACNNNNNCTCC 8 cut(s) 49, 79, 270, 300, 441, 471, 1189, 1219
Bsc4I CCNNNNNNNGG 6 cut(s) 175, 413, 1199, 1434, 1472, 1542
Bse118I RCCGGY 2 cut(s) 317, 1567
Bse1I ACTGG 5 cut(s) 19, 407, 1058, 1543, 1726
Bse21I CCTNAGG 1 cut(s) 786
Bse3DI GCAATG 2 cut(s) 345, 1494
Bse8I GATNNNNATC 1 cut(s) 1292
BseBI CCWGG 5 cut(s) 163, 176, 1132, 1174, 1435
BseDI CCNNGG 5 cut(s) 566, 876, 1182, 1228, 1562
BseGI GGATG 4 cut(s) 595, 1169, 1189, 1531
BseJI GATNNNNATC 1 cut(s) 1292
BseLI CCNNNNNNNGG 6 cut(s) 175, 413, 1199, 1434, 1472, 1542
BseMI GCAATG 2 cut(s) 345, 1494
BseMII CTCAG 4 cut(s) 154, 448, 522, 1761
BseNI ACTGG 5 cut(s) 19, 407, 1058, 1543, 1726
BseRI GAGGAG 4 cut(s) 57, 535, 828, 1721
BseXI GCAGC 3 cut(s) 496, 842, 1558
BseYI CCCAGC 4 cut(s) 71, 470, 625, 1455
BsgI GTGCAG 2 cut(s) 1222, 1557
Bsh1236I CGCG 1 cut(s) 1159
BshFI GGCC 5 cut(s) 881, 968, 1125, 1325, 1567
BshNI GGYRCC 3 cut(s) 1134, 1298, 1516
BsiHKAI GWGCWC 2 cut(s) 183, 767
BsiSI CCGG 2 cut(s) 318, 1568
BslFI GGGAC 3 cut(s) 106, 804, 1064
BslI CCNNNNNNNGG 6 cut(s) 175, 413, 1199, 1434, 1472, 1542
BsmFI GGGAC 3 cut(s) 106, 804, 1064
BsmI GAATGC 2 cut(s) 156, 1219
BsnI GGCC 5 cut(s) 881, 968, 1125, 1325, 1567
Bsp119I TTCGAA 1 cut(s) 1629
Bsp1286I GDGCHC 2 cut(s) 183, 767
Bsp143I GATC 5 cut(s) 238, 562, 888, 1287, 1353
Bsp1720I GCTNAGC 1 cut(s) 1747
Bsp19I CCATGG 2 cut(s) 876, 1562
BspACI CCGC 3 cut(s) 1073, 1159, 1466
BspANI GGCC 5 cut(s) 881, 968, 1125, 1325, 1567
BspCNI CTCAG 4 cut(s) 153, 447, 523, 1760
BspFNI CGCG 1 cut(s) 1159
BspHI TCATGA 1 cut(s) 1602
BspLI GGNNCC 6 cut(s) 167, 931, 990, 1136, 1300, 1518
BspPI GGATC 2 cut(s) 557, 883
BspT104I TTCGAA 1 cut(s) 1629
BspT107I GGYRCC 3 cut(s) 1134, 1298, 1516
BsrDI GCAATG 2 cut(s) 345, 1494
BsrFI RCCGGY 2 cut(s) 317, 1567
BsrI ACTGG 5 cut(s) 19, 407, 1058, 1543, 1726
BssAI RCCGGY 2 cut(s) 317, 1567
BssECI CCNNGG 5 cut(s) 566, 876, 1182, 1228, 1562
BssMI GATC 5 cut(s) 238, 562, 888, 1287, 1353
BssT1I CCWWGG 4 cut(s) 566, 876, 1182, 1562
Bst2UI CCWGG 5 cut(s) 163, 176, 1132, 1174, 1435
Bst4CI ACNGT 3 cut(s) 709, 1486, 1677
Bst6I CTCTTC 5 cut(s) 212, 879, 1229, 1262, 1400
BstAPI GCANNNNNTGC 2 cut(s) 910, 1250
BstBI TTCGAA 1 cut(s) 1629
BstC8I GCNNGC 5 cut(s) 156, 266, 911, 1084, 1569
BstDEI CTNAG 5 cut(s) 140, 434, 531, 786, 1747
BstDSI CCRYGG 2 cut(s) 876, 1562
BstEII GGTNACC 1 cut(s) 1461
BstENI CCTNNNNNAGG 1 cut(s) 1197
BstF5I GGATG 4 cut(s) 595, 1169, 1189, 1531
BstFNI CGCG 1 cut(s) 1159
BstHHI GCGC 1 cut(s) 1159
BstKTI GATC 5 cut(s) 241, 565, 891, 1290, 1356
BstMBI GATC 5 cut(s) 238, 562, 888, 1287, 1353
BstNI CCWGG 5 cut(s) 163, 176, 1132, 1174, 1435
BstNSI RCATGY 2 cut(s) 268, 1653
BstPI GGTNACC 1 cut(s) 1461
BstSCI CCNGG 5 cut(s) 161, 174, 1130, 1172, 1433
BstSFI CTRYAG 2 cut(s) 300, 834
BstUI CGCG 1 cut(s) 1159
BstV1I GCAGC 3 cut(s) 496, 842, 1558
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 888
BstXI CCANNNNNNTGG 3 cut(s) 573, 775, 1538
BstYI RGATCY 1 cut(s) 888
Bsu36I CCTNAGG 1 cut(s) 786
BsuRI GGCC 5 cut(s) 881, 968, 1125, 1325, 1567
BtgI CCRYGG 2 cut(s) 876, 1562
BtsCI GGATG 4 cut(s) 595, 1169, 1189, 1531
BtsI GCAGTG 1 cut(s) 1758
BtsIMutI CAGTG 8 cut(s) 384, 689, 714, 1032, 1208, 1260, 1536, 1758
Cac8I GCNNGC 5 cut(s) 156, 266, 911, 1084, 1569
CaiI CAGNNNCTG 4 cut(s) 209, 299, 413, 910
CciI TCATGA 1 cut(s) 1602
CfoI GCGC 1 cut(s) 1159
Cfr10I RCCGGY 2 cut(s) 317, 1567
Cfr13I GGNCC 2 cut(s) 165, 320
Csp6I GTAC 3 cut(s) 1135, 1517, 1719
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviQI GTAC 3 cut(s) 1135, 1517, 1719
DdeI CTNAG 5 cut(s) 140, 434, 531, 786, 1747
DpnI GATC 5 cut(s) 240, 564, 890, 1289, 1355
DpnII GATC 5 cut(s) 238, 562, 888, 1287, 1353
DraIII CACNNNGTG 1 cut(s) 1542
EaeI YGGCCR 3 cut(s) 879, 1323, 1565
Eam1104I CTCTTC 5 cut(s) 212, 879, 1229, 1262, 1400
EarI CTCTTC 5 cut(s) 212, 879, 1229, 1262, 1400
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 4 cut(s) 566, 876, 1182, 1562
Eco24I GRGCYC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 1005
Eco47I GGWCC 2 cut(s) 165, 320
Eco53kI GAGCTC 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 786
Eco91I GGTNACC 1 cut(s) 1461
EcoICRI GAGCTC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 1197
EcoO65I GGTNACC 1 cut(s) 1461
EcoRII CCWGG 5 cut(s) 161, 174, 1130, 1172, 1433
EcoRV GATATC 1 cut(s) 1005
EcoT14I CCWWGG 4 cut(s) 566, 876, 1182, 1562
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 4 cut(s) 566, 876, 1182, 1562
FaqI GGGAC 3 cut(s) 106, 804, 1064
FauNDI CATATG 1 cut(s) 1643
FbaI TGATCA 1 cut(s) 1353
Fnu4HI GCNGC 5 cut(s) 510, 831, 1074, 1160, 1572
FokI GGATG 4 cut(s) 602, 1156, 1176, 1518
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 5 cut(s) 510, 831, 1074, 1160, 1572
FspBI CTAG 4 cut(s) 794, 1163, 1410, 1769
GlaI GCGC 1 cut(s) 1158
GluI GCNGC 5 cut(s) 510, 831, 1074, 1160, 1572
GsaI CCCAGC 4 cut(s) 75, 474, 629, 1459
HaeIII GGCC 5 cut(s) 881, 968, 1125, 1325, 1567
HapII CCGG 2 cut(s) 318, 1568
HhaI GCGC 1 cut(s) 1159
Hin6I GCGC 1 cut(s) 1157
HinP1I GCGC 1 cut(s) 1157
HincII GTYRAC 1 cut(s) 1482
HindII GTYRAC 1 cut(s) 1482
HindIII AAGCTT 2 cut(s) 1084, 1439
HinfI GANTC 4 cut(s) 279, 863, 1233, 1738
HpaII CCGG 2 cut(s) 318, 1568
HphI GGTGA 2 cut(s) 790, 1351
Hpy166II GTNNAC 2 cut(s) 1482, 1687
Hpy188I TCNGA 6 cut(s) 143, 437, 1009, 1037, 1232, 1475
Hpy188III TCNNGA 2 cut(s) 821, 1603
Hpy8I GTNNAC 2 cut(s) 1482, 1687
Hpy99I CGWCG 2 cut(s) 920, 1347
HpyAV CCTTC 6 cut(s) 333, 374, 909, 1146, 1203, 1510
HpyCH4III ACNGT 3 cut(s) 709, 1486, 1677
HpyCH4IV ACGT 1 cut(s) 1065
HpyF3I CTNAG 5 cut(s) 140, 434, 531, 786, 1747
HpySE526I ACGT 1 cut(s) 1065
HspAI GCGC 1 cut(s) 1157
KpnI GGTACC 2 cut(s) 1138, 1520
KroI GCCGGC 1 cut(s) 1567
KroNI GCCGGC 1 cut(s) 1569
Ksp22I TGATCA 1 cut(s) 1353
Kzo9I GATC 5 cut(s) 238, 562, 888, 1287, 1353
LmnI GCTCC 3 cut(s) 178, 689, 762
Lsp1109I GCAGC 3 cut(s) 496, 842, 1558
LweI GCATC 4 cut(s) 930, 1198, 1253, 1539
MaeI CTAG 4 cut(s) 794, 1163, 1410, 1769
MaeII ACGT 1 cut(s) 1065
MaeIII GTNAC 7 cut(s) 286, 380, 439, 848, 1061, 1461, 1486
MalI GATC 5 cut(s) 240, 564, 890, 1289, 1355
MboI GATC 5 cut(s) 238, 562, 888, 1287, 1353
MfeI CAATTG 1 cut(s) 1248
MflI RGATCY 1 cut(s) 888
MhlI GDGCHC 2 cut(s) 183, 767
MlsI TGGCCA 1 cut(s) 1325
MluCI AATT 5 cut(s) 389, 402, 452, 741, 1248
MluNI TGGCCA 1 cut(s) 1325
MlyI GAGTC 2 cut(s) 288, 1227
MmeI TCCRAC 4 cut(s) 126, 238, 256, 597
Mox20I TGGCCA 1 cut(s) 1325
MroNI GCCGGC 1 cut(s) 1567
MscI TGGCCA 1 cut(s) 1325
MseI TTAA 2 cut(s) 1443, 1590
Msp20I TGGCCA 1 cut(s) 1325
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 2 cut(s) 318, 1568
MspR9I CCNGG 5 cut(s) 163, 176, 1132, 1174, 1435
MunI CAATTG 1 cut(s) 1248
Mva1269I GAATGC 2 cut(s) 156, 1219
MvaI CCWGG 5 cut(s) 163, 176, 1132, 1174, 1435
MvnI CGCG 1 cut(s) 1159
NaeI GCCGGC 1 cut(s) 1569
NcoI CCATGG 2 cut(s) 876, 1562
NdeI CATATG 1 cut(s) 1643
NdeII GATC 5 cut(s) 238, 562, 888, 1287, 1353
NgoMIV GCCGGC 1 cut(s) 1567
NlaIV GGNNCC 6 cut(s) 167, 931, 990, 1136, 1300, 1518
NmuCI GTSAC 2 cut(s) 286, 439
NspI RCATGY 2 cut(s) 268, 1653
NspV TTCGAA 1 cut(s) 1629
PaeI GCATGC 1 cut(s) 268
PagI TCATGA 1 cut(s) 1602
PcsI WCGNNNNNNNCGW 1 cut(s) 1425
PctI GAATGC 2 cut(s) 156, 1219
PdiI GCCGGC 1 cut(s) 1569
PfeI GAWTC 2 cut(s) 863, 1738
PflMI CCANNNNNTGG 2 cut(s) 413, 1542
PfoI TCCNGGA 1 cut(s) 1433
PkrI GCNGC 5 cut(s) 511, 832, 1075, 1161, 1573
PleI GAGTC 2 cut(s) 287, 1227
PpsI GAGTC 2 cut(s) 287, 1227
PsiI TTATAA 2 cut(s) 740, 1698
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 5 cut(s) 161, 174, 1130, 1172, 1433
PspEI GGTNACC 1 cut(s) 1461
PspFI CCCAGC 4 cut(s) 71, 470, 625, 1455
PspGI CCWGG 5 cut(s) 161, 174, 1130, 1172, 1433
PspN4I GGNNCC 6 cut(s) 167, 931, 990, 1136, 1300, 1518
PspPI GGNCC 2 cut(s) 165, 320
PstNI CAGNNNCTG 4 cut(s) 209, 299, 413, 910
PsuI RGATCY 1 cut(s) 888
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 3 cut(s) 1136, 1518, 1720
RsaNI GTAC 3 cut(s) 1135, 1517, 1719
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 1443, 1590
SatI GCNGC 5 cut(s) 510, 831, 1074, 1160, 1572
Sau3AI GATC 5 cut(s) 238, 562, 888, 1287, 1353
Sau96I GGNCC 2 cut(s) 165, 320
ScaI AGTACT 1 cut(s) 1720
SchI GAGTC 2 cut(s) 288, 1227
ScrFI CCNGG 5 cut(s) 163, 176, 1132, 1174, 1435
SduI GDGCHC 2 cut(s) 183, 767
SfaNI GCATC 4 cut(s) 930, 1198, 1253, 1539
SfcI CTRYAG 2 cut(s) 300, 834
SfuI TTCGAA 1 cut(s) 1629
SinI GGWCC 2 cut(s) 165, 320
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SphI GCATGC 1 cut(s) 268
Sse9I AATT 5 cut(s) 389, 402, 452, 741, 1248
SsiI CCGC 3 cut(s) 1073, 1159, 1466
SspMI CTAG 4 cut(s) 794, 1163, 1410, 1769
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 5 cut(s) 161, 174, 1130, 1172, 1433
StyI CCWWGG 4 cut(s) 566, 876, 1182, 1562
TaaI ACNGT 3 cut(s) 709, 1486, 1677
TaiI ACGT 1 cut(s) 1068
TaqI TCGA 5 cut(s) 1269, 1345, 1547, 1629, 1691
TasI AATT 5 cut(s) 389, 402, 452, 741, 1248
TatI WGTACW 1 cut(s) 1718
TauI GCSGC 2 cut(s) 1076, 1162
TfiI GAWTC 2 cut(s) 863, 1738
Tru1I TTAA 2 cut(s) 1443, 1590
Tru9I TTAA 2 cut(s) 1443, 1590
TscAI CASTG 8 cut(s) 391, 696, 714, 1032, 1215, 1267, 1543, 1758
TseFI GTSAC 2 cut(s) 286, 439
TseI GCWGC 3 cut(s) 509, 830, 1571
Tsp45I GTSAC 2 cut(s) 286, 439
TspDTI ATGAA 7 cut(s) 230, 322, 704, 1395, 1546, 1645, 1746
TspGWI ACGGA 2 cut(s) 922, 1417
TspRI CASTG 8 cut(s) 391, 696, 714, 1032, 1215, 1267, 1543, 1758
Van91I CCANNNNNTGG 2 cut(s) 413, 1542
VpaK11BI GGWCC 2 cut(s) 165, 320
XagI CCTNNNNNAGG 1 cut(s) 1197
XapI RAATTY 3 cut(s) 389, 402, 452
XceI RCATGY 2 cut(s) 268, 1653
XcmI CCANNNNNNNNNTGG 1 cut(s) 1560
XspI CTAG 4 cut(s) 794, 1163, 1410, 1769
ZrmI AGTACT 1 cut(s) 1720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.