Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Forward (+)

33600346 .. 33601389

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACTAGAAAGAAGGTGAAACTTACCTACATCACAAATGACAGTGCTCGAAAAGCGACATTCAAAAAAAGGAAGATGAGTCTTATGAAGAAGGTGAGTGAACTCTGCACCCTTTGTGACATTGATGCTTGTGCTATTATCTACAGCCCCTATGACTCCCAGCCTGAAGTCTGGCCTTCCCTCTTGGGAGCCCATCGCGTACTTGCGCAGTTCAAGACCATGCCCGAAATGGAGCAAAGCAAGAAGATGGTAAATCAGGAGAGTTTCCTGAGGCAAAGAATCAACAAGTCTCAAGAACAGCTCAAGAAGCAAAAGAAAGATAATCGGGAAAAGGAGATGGCTCGTGTCATGTTTCAAAGCCTAACTGGAAAGTCTCTCCAGGAATTAACAATGTCAGACCTAACTGACCTCAACTGGGTCATTGACCAGCACCTGAAAGAGATACAACTCAGGATGAAGAACATTAAGAATAAGGCTGTGGAGAGCCCTAATCATGTGCAAGGAGCACAAGGGTTGCCAGCTACAAGGGAGAATAGGATGCCGGCGATGAAGACTAACAGTGAGGGAAGCAACAACAACATGGCGATGAAGAGTGGCGATGAGGGCAGCATCATGCAACATGCAACCCTGGACATGCAAGCTTTTGATCAGATGCGGCATAACATGGAGGCAATGCAACCACAAATGATGCAGATGGTAACTCAGAAGCCGCAAAACTCGTGGCTCATGGACATGATGGATGCGCCAGCACCACCGCCACATCAAGATCATCATCAGCATATGGGGTTTAGGGAGGAAATGATGTTTCCCTTCGCGGATCATGACAACAGTACTATGTGGCCAAATCCTCCTGCTGGTGGCAATAATTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

292

Amino Acids

33.57

Weight (kDa)

9.11

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 51	2.9e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
AccII	CGCG	2 cut(s)	198, 815
AciI	CCGC	4 cut(s)	655, 710, 755, 815
AclWI	GGATC	1 cut(s)	825
AcoI	YGGCCR	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	201, 832
AfiI	CCNNNNNNNGG	3 cut(s)	415, 854, 857
AgsI	TTSAA	3 cut(s)	64, 214, 356
AjnI	CCWGG	2 cut(s)	378, 627
AluBI	AGCT	3 cut(s)	301, 521, 641
AluI	AGCT	3 cut(s)	301, 521, 641
Alw21I	GWGCWC	2 cut(s)	49, 508
Alw26I	GTCTC	2 cut(s)	294, 378
AlwI	GGATC	1 cut(s)	825
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	173, 839
ApeKI	GCWGC	1 cut(s)	606
AspLEI	GCGC	2 cut(s)	208, 745
AsuHPI	GGTGA	2 cut(s)	28, 106
AxyI	CCTNAGG	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	841
BanII	GRGCYC	2 cut(s)	193, 488
BauI	CACGAG	2 cut(s)	342, 718
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	49, 508
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	5 cut(s)	201, 241, 331, 688, 730
BciT130I	CCWGG	2 cut(s)	380, 629
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	294, 378
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	3 cut(s)	607, 656, 710
BlsI	GCNGC	3 cut(s)	608, 657, 711
BmcAI	AGTACT	1 cut(s)	832
Bme1390I	CCNGG	2 cut(s)	380, 629
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	2 cut(s)	380, 629
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	6 cut(s)	115, 528, 618, 642, 678, 730
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	276, 287
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 854, 857
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	370, 419
Bse21I	CCTNAGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	2 cut(s)	380, 629
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	3 cut(s)	459, 543, 745
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	3 cut(s)	415, 854, 857
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	3 cut(s)	260, 463, 716
BseNI	ACTGG	2 cut(s)	370, 419
BseXI	GCAGC	1 cut(s)	618
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	91
Bsh1236I	CGCG	2 cut(s)	198, 815
BshFI	GGCC	2 cut(s)	175, 841
BsiHKAI	GWGCWC	2 cut(s)	49, 508
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	3 cut(s)	415, 854, 857
BsmAI	GTCTC	2 cut(s)	294, 378
BsnI	GGCC	2 cut(s)	175, 841
Bsp1286I	GDGCHC	4 cut(s)	49, 193, 488, 508
Bsp143I	GATC	3 cut(s)	646, 766, 817
BspACI	CCGC	4 cut(s)	655, 710, 755, 815
BspANI	GGCC	2 cut(s)	175, 841
BspCNI	CTCAG	3 cut(s)	261, 462, 715
BspFNI	CGCG	2 cut(s)	198, 815
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	370, 419
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	3 cut(s)	646, 766, 817
BssSI	CACGAG	2 cut(s)	342, 718
Bst2BI	CACGAG	2 cut(s)	342, 718
Bst2UI	CCWGG	2 cut(s)	380, 629
Bst4CI	ACNGT	3 cut(s)	44, 560, 830
Bst6I	CTCTTC	1 cut(s)	584
BstC8I	GCNNGC	4 cut(s)	519, 543, 639, 747
BstDEI	CTNAG	3 cut(s)	269, 449, 702
BstF5I	GGATG	3 cut(s)	459, 543, 745
BstFNI	CGCG	2 cut(s)	198, 815
BstHHI	GCGC	2 cut(s)	208, 745
BstKTI	GATC	3 cut(s)	649, 769, 820
BstMAI	GTCTC	2 cut(s)	294, 378
BstMBI	GATC	3 cut(s)	646, 766, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 307, 603
BstNI	CCWGG	2 cut(s)	380, 629
BstNSI	RCATGY	2 cut(s)	623, 637
BstSCI	CCNGG	2 cut(s)	378, 627
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	198, 815
BstV1I	GCAGC	1 cut(s)	618
BstV2I	GAAGAC	1 cut(s)	557
Bsu36I	CCTNAGG	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	175, 841
BtgZI	GCGATG	4 cut(s)	179, 560, 599, 612
BtsCI	GGATG	3 cut(s)	459, 543, 745
BtsIMutI	CAGTG	2 cut(s)	49, 565
Cac8I	GCNNGC	4 cut(s)	519, 543, 639, 747
CaiI	CAGNNNCTG	1 cut(s)	433
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	2 cut(s)	208, 745
Cfr10I	RCCGGY	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	200, 831
CspCI	CAANNNNNGTGG	2 cut(s)	701, 736
CviQI	GTAC	2 cut(s)	200, 831
DdeI	CTNAG	3 cut(s)	269, 449, 702
DpnI	GATC	3 cut(s)	648, 768, 819
DpnII	GATC	3 cut(s)	646, 766, 817
EaeI	YGGCCR	1 cut(s)	839
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco24I	GRGCYC	2 cut(s)	193, 488
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	378, 627
EcoT38I	GRGCYC	2 cut(s)	193, 488
FauNDI	CATATG	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	3 cut(s)	607, 656, 710
FokI	GGATG	3 cut(s)	466, 550, 752
FriOI	GRGCYC	2 cut(s)	193, 488
Fsp4HI	GCNGC	3 cut(s)	607, 656, 710
FspBI	CTAG	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	2 cut(s)	207, 744
GluI	GCNGC	3 cut(s)	607, 656, 710
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	175, 841
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	2 cut(s)	208, 745
Hin6I	GCGC	2 cut(s)	206, 743
HinP1I	GCGC	2 cut(s)	206, 743
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	3 cut(s)	79, 155, 279
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	2 cut(s)	28, 106
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	3 cut(s)	397, 651, 705
Hpy188III	TCNNGA	9 cut(s)	214, 257, 268, 293, 304, 326, 451, 764, 821
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	7, 85, 186, 820
HpyCH4III	ACNGT	3 cut(s)	44, 560, 830
HpyCH4V	TGCA	7 cut(s)	108, 499, 616, 623, 637, 676, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 307, 603
HpyF3I	CTNAG	3 cut(s)	269, 449, 702
HspAI	GCGC	2 cut(s)	206, 743
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	646, 766, 817
LmnI	GCTCC	3 cut(s)	188, 232, 503
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	6 cut(s)	115, 528, 618, 642, 678, 730
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	116, 697
MalI	GATC	3 cut(s)	648, 768, 819
MboI	GATC	3 cut(s)	646, 766, 817
MboII	GAAGA	6 cut(s)	85, 100, 256, 469, 562, 601
MhlI	GDGCHC	4 cut(s)	49, 193, 488, 508
MlsI	TGGCCA	1 cut(s)	841
MluCI	AATT	2 cut(s)	383, 865
MluNI	TGGCCA	1 cut(s)	841
MlyI	GAGTC	2 cut(s)	88, 149
MnlI	CCTC	8 cut(s)	191, 264, 419, 556, 595, 661, 787, 858
Mox20I	TGGCCA	1 cut(s)	841
MroNI	GCCGGC	1 cut(s)	541
MscI	TGGCCA	1 cut(s)	841
MseI	TTAA	2 cut(s)	386, 465
MslI	CAYNNNNRTG	2 cut(s)	584, 731
Msp20I	TGGCCA	1 cut(s)	841
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	380, 629
MvaI	CCWGG	2 cut(s)	380, 629
MvnI	CGCG	2 cut(s)	198, 815
MwoI	GCNNNNNNNGC	3 cut(s)	53, 307, 603
NaeI	GCCGGC	1 cut(s)	543
NdeI	CATATG	1 cut(s)	780
NdeII	GATC	3 cut(s)	646, 766, 817
NgoMIV	GCCGGC	1 cut(s)	541
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	116
NsbI	TGCGCA	1 cut(s)	207
NspI	RCATGY	2 cut(s)	623, 637
PagI	TCATGA	1 cut(s)	820
PdiI	GCCGGC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	3 cut(s)	608, 657, 711
PleI	GAGTC	2 cut(s)	87, 149
PpsI	GAGTC	2 cut(s)	87, 149
Psp6I	CCWGG	2 cut(s)	378, 627
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	378, 627
PspN4I	GGNNCC	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	201, 832
RsaNI	GTAC	2 cut(s)	200, 831
RseI	CAYNNNNRTG	2 cut(s)	584, 731
SaqAI	TTAA	2 cut(s)	386, 465
SatI	GCNGC	3 cut(s)	607, 656, 710
Sau3AI	GATC	3 cut(s)	646, 766, 817
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	2 cut(s)	88, 149
ScrFI	CCNGG	2 cut(s)	380, 629
SduI	GDGCHC	4 cut(s)	49, 193, 488, 508
SetI	ASST	9 cut(s)	18, 29, 96, 303, 402, 411, 435, 523, 643
SfaNI	GCATC	6 cut(s)	115, 528, 618, 642, 678, 730
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	2 cut(s)	584, 731
SmlI	CTYRAG	2 cut(s)	291, 302
SmoI	CTYRAG	2 cut(s)	291, 302
Sse9I	AATT	2 cut(s)	383, 865
SsiI	CCGC	4 cut(s)	655, 710, 755, 815
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	378, 627
TaaI	ACNGT	3 cut(s)	44, 560, 830
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	383, 865
TatI	WGTACW	1 cut(s)	830
TauI	GCSGC	2 cut(s)	658, 712
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	2 cut(s)	386, 465
Tru9I	TTAA	2 cut(s)	386, 465
TscAI	CASTG	2 cut(s)	49, 565
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	606
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	4 cut(s)	101, 470, 563, 602
TspRI	CASTG	2 cut(s)	49, 565
XceI	RCATGY	2 cut(s)	623, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.