Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000249

Physical Location & Seq

Genomic Coordinates Reverse (-)

12317166 .. 12318790

Gene Structure 1625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCAAGAAAAAAGTTAAATCTAACTTACATTTTCAATGATAGAATGAGGAAAAGATCGTTCAAGCAGAGGAGAGAAGGATTTCTGAAGAAACTCAATGATCTCAAGGTTTTATGCGATGTTAATGCATGTGCGGTCGTCTACAATCCATTCAACTCAAATCCAGATGTGTGGCCATCAAAATCGGAGGTGAATAATATCATCAAGAAATTTGAGATGTTACCGGAGACCCAAAAGAAAGTTAAATCGGTGAACCACGAAGAATTTCTCAATCTATACATCTCAAAAGTCGAAAAGCAAAGTAAGAAATTAATTGTAGAAAATAAGGAGACTTGCTTAAAGGAGGTCATGTTCAAGTGTCTTGGTGGGAACATGGGAGATTTTGTTATGAATGATAATGATCGTCTTGACTTATGTAAGTTTATTGATCACTATCTTAGAAATCTTTATCATCATAAAAATGTAACCCTCAACAATCCAAATTTTGAAATCGGAGAATCTTCTTCATTAATGGATATGGCACCAACCGCTACAACTGGAAACATGGCAACAACTGTAGTAGATGAAGGCATGACACCACTTCTTATTGCTGAAGGGAGTTCCTCCTCATTTTTGAATTCTCCACTCTTCAACTCTCCTCAGCTAACCAACGAGTTGCAGCTTATAGTCTCTCAAAACCATAGATTAGAGAATTCTCTGGCAAGTAATCTCTTTTTCAGTGAAGGGCAAGACATTTGCATTCCAGATATGAATCAGTCCATAATCCCATCAAACCAAGGAGCAGAACATGTGGATTTTCTTGAAAGTAATTTTCTACCTAATAACAATCAAGAAGTTTATATCCCAGTTATGGATCAGGATGAAGTTTACAATCCAAATCAAAATCATTATGAGAACCAACAAGGATTCATTGACGAGATGATGAAATATGCTGAGAAAACAAGTTTTCCTTGGATGGTAGAGAACCACTGTTATAATCACAACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

329

Amino Acids

38.02

Weight (kDa)

5.54

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 50	4.6e-10	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22590 AT1G22590 AT2G28700 AT3G05860 AT3G05860 AT3G05860 AT5G26630 AT5G27810 AT5G48670
fragaria_vesca	FvH4_6g08460 FvH4_6g08570 FvH4_6g21170 FvH4_6g43410 FvH4_7g09730
malus_domestica	MD04G1186100.v1.1 MD04G1186200.v1.1 MD04G1186300.v1.1 MD06G1013100.v1.1 MD06G1013200.v1.1 MD06G1013500.v1.1 MD06G1013600.v1.1 MD08G1200100.v1.1 MD12G1199500.v1.1 MD12G1199600.v1.1 MD12G1199700.v1.1 MD15G1387300.v1.1
prunus_persica	Prupe.1G533600_v2.0.a1 Prupe.1G533700_v2.0.a1 Prupe.3G020400_v2.0.a1 Prupe.6G303900_v2.0.a1 Prupe.6G304100_v2.0.a1 Prupe.7G092700_v2.0.a1
pyrus_communis	pycom04g16460 pycom06g01090 pycom12g18580 pycom12g18590
rosa_chinensis	RchiOBHm_Chr1g0321431 RchiOBHm_Chr1g0336291 RchiOBHm_Chr1g0346681 RchiOBHm_Chr1g0346741 RchiOBHm_Chr1g0347651 RchiOBHm_Chr3g0458611 RchiOBHm_Chr6g0267971 RchiOBHm_Chr6g0295031 RchiOBHm_Chr6g0296451 RchiOBHm_Chr7g0222461 RchiOBHm_Chr7g0222491 RchiOBHm_Chr7g0222511 RchiOBHm_Chr7g0223301
rosa_laevigata	RLG00000002052 RLG00000002057 RLG00000011691 RLG00000025146 RLG00000028786 RLG00000029375 RLG00000030422
rosa_multiflora	Rmu_co8262069.1_g000001 Rmu_sc0000087.1_g000025 Rmu_sc0000724.1_g000014 Rmu_sc0001453.1_g000004 Rmu_sc0001634.1_g000008 Rmu_sc0002096.1_g000035 Rmu_sc0002349.1_g000003 Rmu_sc0002349.1_g000024 Rmu_sc0003232.1_g000005 Rmu_sc0004404.1_g000010 Rmu_sc0004404.1_g000018 Rmu_sc0004638.1_g000024 Rmu_sc0005124.1_g000012 Rmu_sc0008767.1_g000014 Rmu_sc0014221.1_g000005 Rmu_sc0038216.1_g000002 Rmu_ssc0000146.1_g000019 Rmu_ssc0000146.1_g000023
rosa_roxburghii	Rroxscaffold_1G00004980 Rroxscaffold_3G00236720 Rroxscaffold_3G00236940 Rroxscaffold_4G00308370 Rroxscaffold_4G00308400 Rroxscaffold_4G00315810 Rroxscaffold_6G00420920 Rroxscaffold_7G00171520 Rroxscaffold_7G00200280
rosa_rugosa	Rorug01G0032700 Rorug01G0123500 Rorug01G0182200 Rorug01G0182400 Rorug01G0188300 Rorug01G0188500 Rorug03G0030200 Rorug06G0033600 Rorug06G0249000 Rorug06G0262500 Rorug07G0208800 Rorug07G0209700 Rorug07G0210100 Rorug07G0215900 Rorug07G0216000
rosa_samantha	Rh1AG044400 Rh1AG144000 Rh1AG201000 Rh1BG042600 Rh1BG113600 Rh1BG167200 Rh1BG171100 Rh1CG135700 Rh1DG150600 Rh3BG091400 Rh6AG157800 Rh6AG373900 Rh6BG156100 Rh6BG159900 Rh6BG369500 Rh6BG382500 Rh6DG141300 Rh6DG145600 Rh6DG362600 Rh6DG375000 Rh7AG351000 Rh7AG351600 Rh7AG351800 Rh7BG342000 Rh7BG342400 Rh7CG368300 Rh7CG369000 Rh7CG369200
rosa_wichuraiana	Rw0G015210 Rw0G021330 Rw1G003960 Rw1G016840 Rw3G007550 Rw6G013730 Rw6G032610 Rw7G029680 Rw7G030010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	975
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	2 cut(s)	134, 528
AclWI	GGATC	1 cut(s)	861
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	5 cut(s)	209, 263, 481, 616, 691
AcuI	CTGAAG	2 cut(s)	107, 612
AfiI	CCNNNNNNNGG	1 cut(s)	850
AflIII	ACRYGT	1 cut(s)	787
AgsI	TTSAA	8 cut(s)	37, 64, 154, 355, 488, 616, 631, 803
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	2 cut(s)	643, 661
AluI	AGCT	2 cut(s)	643, 661
Alw26I	GTCTC	3 cut(s)	221, 323, 673
AlwI	GGATC	1 cut(s)	861
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	658
ApoI	RAATTY	5 cut(s)	209, 263, 481, 616, 691
AseI	ATTAAT	2 cut(s)	311, 509
Asp700I	GAANNNNTTC	2 cut(s)	81, 264
AsuHPI	GGTGA	2 cut(s)	202, 262
BalI	TGGCCA	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	520
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	3 cut(s)	184, 775, 949
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	3 cut(s)	221, 323, 673
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	1 cut(s)	659
BlsI	GCNGC	1 cut(s)	660
BmiI	GGNNCC	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	839
BmuI	ACTGGG	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	3 cut(s)	399, 432, 750
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	775, 950
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	850
Bse1I	ACTGG	3 cut(s)	541, 845, 985
Bse8I	GATNNNNATC	3 cut(s)	399, 432, 750
BseDI	CCNNGG	2 cut(s)	775, 950
BseGI	GGATG	2 cut(s)	865, 960
BseJI	GATNNNNATC	3 cut(s)	399, 432, 750
BseLI	CCNNNNNNNGG	1 cut(s)	850
BseMII	CTCAG	2 cut(s)	653, 924
BseNI	ACTGG	3 cut(s)	541, 845, 985
BseRI	GAGGAG	3 cut(s)	85, 595, 627
BseXI	GCAGC	1 cut(s)	670
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	175
BshNI	GGYRCC	1 cut(s)	520
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	850
BsmAI	GTCTC	3 cut(s)	221, 323, 673
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	56, 100, 400, 427, 853
BspACI	CCGC	2 cut(s)	134, 528
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	2 cut(s)	652, 925
BspLI	GGNNCC	1 cut(s)	522
BspPI	GGATC	1 cut(s)	861
BspT107I	GGYRCC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	3 cut(s)	541, 845, 985
BssECI	CCNNGG	2 cut(s)	775, 950
BssMI	GATC	5 cut(s)	56, 100, 400, 427, 853
BssT1I	CCWWGG	2 cut(s)	775, 950
Bst4CI	ACNGT	2 cut(s)	556, 971
Bst6I	CTCTTC	1 cut(s)	632
BstDEI	CTNAG	3 cut(s)	437, 639, 933
BstF5I	GGATG	2 cut(s)	865, 960
BstKTI	GATC	5 cut(s)	59, 103, 403, 430, 856
BstMAI	GTCTC	3 cut(s)	221, 323, 673
BstMBI	GATC	5 cut(s)	56, 100, 400, 427, 853
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstNSI	RCATGY	2 cut(s)	132, 791
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	670
BstXI	CCANNNNNNTGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	865, 960
BtsIMutI	CAGTG	2 cut(s)	724, 967
CviAII	CATG	6 cut(s)	129, 349, 373, 544, 571, 788
CviJI	RGCY	3 cut(s)	175, 643, 661
CviKI_1	RGCY	3 cut(s)	175, 643, 661
DdeI	CTNAG	3 cut(s)	437, 639, 933
DpnI	GATC	5 cut(s)	58, 102, 402, 429, 855
DpnII	GATC	5 cut(s)	56, 100, 400, 427, 853
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
Eco130I	CCWWGG	2 cut(s)	775, 950
Eco31I	GGTCTC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	107, 612
EcoRI	GAATTC	2 cut(s)	616, 691
EcoT14I	CCWWGG	2 cut(s)	775, 950
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	2 cut(s)	775, 950
FaeI	CATG	6 cut(s)	132, 352, 376, 547, 574, 791
FalI	AAGNNNNNCTT	2 cut(s)	934, 966
FatI	CATG	6 cut(s)	128, 348, 372, 543, 570, 787
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	659
FokI	GGATG	2 cut(s)	872, 967
Fsp4HI	GCNGC	1 cut(s)	659
GluI	GCNGC	1 cut(s)	659
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	6 cut(s)	132, 352, 376, 547, 574, 791
HinfI	GANTC	3 cut(s)	497, 751, 906
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	202, 262
Hpy166II	GTNNAC	3 cut(s)	142, 253, 868
Hpy188I	TCNGA	3 cut(s)	87, 187, 494
Hpy188III	TCNNGA	7 cut(s)	164, 205, 407, 743, 800, 830, 857
Hpy8I	GTNNAC	3 cut(s)	142, 253, 868
HpyAV	CCTTC	4 cut(s)	71, 560, 587, 716
HpyCH4III	ACNGT	2 cut(s)	556, 971
HpyCH4V	TGCA	3 cut(s)	128, 658, 738
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	3 cut(s)	437, 639, 933
Hsp92II	CATG	6 cut(s)	132, 352, 376, 547, 574, 791
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	56, 100, 400, 427, 853
LmnI	GCTCC	1 cut(s)	779
LpnPI	CCDG	7 cut(s)	177, 237, 522, 683, 756, 842, 858
Lsp1109I	GCAGC	1 cut(s)	670
MaeIII	GTNAC	2 cut(s)	219, 463
MalI	GATC	5 cut(s)	58, 102, 402, 429, 855
MboI	GATC	5 cut(s)	56, 100, 400, 427, 853
MboII	GAAGA	5 cut(s)	100, 272, 492, 495, 619
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	8 cut(s)	209, 263, 308, 312, 481, 616, 691, 808
MluNI	TGGCCA	1 cut(s)	175
MnlI	CCTC	8 cut(s)	42, 63, 181, 337, 479, 613, 616, 648
Mox20I	TGGCCA	1 cut(s)	175
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	2 cut(s)	81, 264
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	6 cut(s)	17, 123, 243, 311, 338, 509
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	175
MspI	CCGG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	738
MwoI	GCNNNNNNNGC	1 cut(s)	527
NdeII	GATC	5 cut(s)	56, 100, 400, 427, 853
NlaIII	CATG	6 cut(s)	132, 352, 376, 547, 574, 791
NlaIV	GGNNCC	1 cut(s)	522
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	2 cut(s)	132, 791
PciI	ACATGT	1 cut(s)	787
PctI	GAATGC	1 cut(s)	738
PdmI	GAANNNNTTC	2 cut(s)	81, 264
PfeI	GAWTC	3 cut(s)	497, 751, 906
PkrI	GCNGC	1 cut(s)	660
PscI	ACATGT	1 cut(s)	787
PshBI	ATTAAT	2 cut(s)	311, 509
PsiI	TTATAA	1 cut(s)	975
PspN4I	GGNNCC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	6 cut(s)	17, 123, 243, 311, 338, 509
SatI	GCNGC	1 cut(s)	659
Sau3AI	GATC	5 cut(s)	56, 100, 400, 427, 853
SetI	ASST	6 cut(s)	111, 192, 348, 645, 663, 820
SfcI	CTRYAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	8 cut(s)	209, 263, 308, 312, 481, 616, 691, 808
SsiI	CCGC	2 cut(s)	134, 528
StyI	CCWWGG	2 cut(s)	775, 950
TaaI	ACNGT	2 cut(s)	556, 971
TaqI	TCGA	1 cut(s)	291
TasI	AATT	8 cut(s)	209, 263, 308, 312, 481, 616, 691, 808
TfiI	GAWTC	3 cut(s)	497, 751, 906
Tru1I	TTAA	6 cut(s)	17, 123, 243, 311, 338, 509
Tru9I	TTAA	6 cut(s)	17, 123, 243, 311, 338, 509
TscAI	CASTG	2 cut(s)	724, 974
TseI	GCWGC	1 cut(s)	658
TspDTI	ATGAA	7 cut(s)	404, 495, 579, 764, 876, 898, 938
TspRI	CASTG	2 cut(s)	724, 974
VspI	ATTAAT	2 cut(s)	311, 509
XapI	RAATTY	5 cut(s)	209, 263, 481, 616, 691
XceI	RCATGY	2 cut(s)	132, 791
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	2 cut(s)	81, 264
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.